Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KQY33_RS02630 Genome accession   NZ_CP076733
Coordinates   525738..526787 (+) Length   349 a.a.
NCBI ID   WP_284634000.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd2008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 520738..531787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY33_RS02615 (KQY33_02615) mutS 521614..524217 (-) 2604 WP_284634478.1 DNA mismatch repair protein MutS -
  KQY33_RS02620 (KQY33_02620) pncC 524430..524918 (+) 489 WP_264954837.1 nicotinamide-nucleotide amidase -
  KQY33_RS02625 (KQY33_02625) - 525056..525550 (+) 495 Protein_478 ATPase domain-containing protein -
  KQY33_RS02630 (KQY33_02630) recA 525738..526787 (+) 1050 WP_284634000.1 recombinase RecA Machinery gene
  KQY33_RS02635 (KQY33_02635) - 527080..528255 (+) 1176 WP_284634001.1 GTPase -
  KQY33_RS02640 (KQY33_02640) - 528947..529909 (+) 963 WP_284634002.1 hypothetical protein -
  KQY33_RS02645 (KQY33_02645) - 529991..530764 (-) 774 WP_284634003.1 hypothetical protein -
  KQY33_RS02650 - 530814..531692 (-) 879 WP_284634004.1 HNH endonuclease -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37556.94 Da        Isoelectric Point: 4.8081

>NTDB_id=577813 KQY33_RS02630 WP_284634000.1 525738..526787(+) (recA) [Photobacterium damselae strain Pdd2008]
MDENKQKALAAALGQIEKQFGKGSIMKLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIA
SAQKEGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQADTQILYGQGFNRNGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANSCKYLVENPAVAAEIEK
KLRDLLLTPVTEEEQVDAKSTDIEEDEAF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=577813 KQY33_RS02630 WP_284634000.1 525738..526787(+) (recA) [Photobacterium damselae strain Pdd2008]
ATGGATGAGAACAAACAGAAAGCATTAGCAGCAGCGCTAGGTCAAATCGAGAAACAGTTCGGTAAAGGCTCAATTATGAA
GTTGGGTGACAACCGTGCGATGGATGTTGAAACAATTTCTACTGGTTCTCTTTCATTAGATATCGCCTTAGGCGCAGGCG
GCCTACCAATGGGTCGTATCGTTGAAATTTTTGGCCCCGAATCATCTGGTAAAACTACGCTAACTCTTGAAGTTATTGCA
TCCGCACAGAAAGAAGGAAAAACCTGTGCATTTATTGATGCTGAACATGCACTTGATCCTATTTATGCTCAAAAGCTAGG
TGTTGATATTGATCAGTTACTTGTATCTCAACCTGACACTGGTGAACAAGCGCTGGAGATCTGTGACGCTTTAGCTCGTT
CAGGTGCTGTTGATGTGATTGTAGTCGATTCTGTAGCCGCTCTGACTCCTAAAGCAGAGATAGAAGGGGAAATGGGCGAC
AGTCACATGGGTTTACAGGCGCGCCTACTTAGTCAGAGCATGCGTAAAATGACTGGTAATTTAAAGGCTTCGAATTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGCAACCCTGAAACCACAACTGGTGGTAATGCAC
TAAAATTTTATGCTTCTGTCCGCCTTGATATCCGTCGTACTGGCTCAATCAAAGAAGGTGACGAAGTTGTCGGCAACGAA
ACTCGCATTAAAGTTGTTAAGAACAAAATTGCTGCACCATTTAAACAAGCAGATACGCAAATCTTATACGGTCAAGGATT
TAACCGTAACGGTGAACTAATTGATTTGGGTGTTAAGCATAAGCTAGTTGAAAAAGCAGGTGCTTGGTACAGTTACCAAG
GTGATAAAATTGGTCAAGGGAAGGCAAACTCTTGTAAATACCTTGTAGAAAATCCAGCCGTTGCCGCTGAAATTGAAAAG
AAATTACGTGATTTGTTACTGACTCCGGTTACAGAGGAAGAGCAAGTTGATGCAAAAAGTACAGATATTGAAGAAGACGA
AGCATTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

86.533

100

0.865
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.533

100

0.865
  recA Pseudomonas stutzeri DSM 10701

72.701

99.713

0.725
  recA Acinetobacter baumannii D1279779

74.924

94.842

0.711
  recA Acinetobacter baylyi ADP1

73.874

95.415

0.705
  recA Glaesserella parasuis strain SC1401

67.151

98.567

0.662
  recA Ralstonia pseudosolanacearum GMI1000

70.552

93.41

0.659
  recA Neisseria gonorrhoeae MS11

69.018

93.41

0.645
  recA Neisseria gonorrhoeae MS11

69.018

93.41

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.018

93.41

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

93.123

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

56.62

100

0.576
  recA Streptococcus pneumoniae R6

57.925

99.427

0.576
  recA Streptococcus pneumoniae TIGR4

57.925

99.427

0.576
  recA Streptococcus pneumoniae Rx1

57.925

99.427

0.576
  recA Streptococcus pneumoniae D39

57.925

99.427

0.576
  recA Streptococcus mutans UA159

56.818

100

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

94.842

0.567
  recA Helicobacter pylori 26695

60.923

93.123

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

61.371

91.977

0.564
  recA Helicobacter pylori strain NCTC11637

60.615

93.123

0.564
  recA Streptococcus mitis SK321

60.681

92.55

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.574

94.269

0.562
  recA Streptococcus mitis NCTC 12261

60.062

92.55

0.556
  recA Streptococcus pyogenes NZ131

59.077

93.123

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.55

0.536