Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OAN307_RS18090 Genome accession   NC_020911
Coordinates   3536417..3537496 (-) Length   359 a.a.
NCBI ID   WP_015501027.1    Uniprot ID   M9RBC3
Organism   Octadecabacter antarcticus 307     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3531417..3542496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OAN307_RS18080 (OAN307_c35880) typA 3531662..3533476 (+) 1815 WP_015501025.1 translational GTPase TypA -
  OAN307_RS18085 (OAN307_c35890) alaS 3533634..3536288 (-) 2655 WP_015501026.1 alanine--tRNA ligase -
  OAN307_RS18090 (OAN307_c35900) recA 3536417..3537496 (-) 1080 WP_015501027.1 recombinase RecA Machinery gene
  OAN307_RS18095 (OAN307_c35910) - 3537678..3538274 (+) 597 WP_015501028.1 hypothetical protein -
  OAN307_RS18100 (OAN307_c35920) - 3538449..3539591 (+) 1143 WP_044044945.1 lytic murein transglycosylase -
  OAN307_RS18105 (OAN307_c35930) cls 3539672..3541120 (+) 1449 WP_015501030.1 cardiolipin synthase -
  OAN307_RS18110 (OAN307_c35940) - 3541117..3541815 (-) 699 WP_015501031.1 endonuclease/exonuclease/phosphatase family protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38544.13 Da        Isoelectric Point: 6.0109

>NTDB_id=57667 OAN307_RS18090 WP_015501027.1 3536417..3537496(-) (recA) [Octadecabacter antarcticus 307]
MATAELLKMTDKKSADKQKALDSALAQIERQFGKGSIMTLGGSAVQEIESTSTGSLGLDIALGIGGIPKGRVVEIYGPES
SGKTTLTLHCLAEEQKKGGVCAFIDAEHALDPGYAKKLGVNLDDLLISQPDTGEQALEIVDTLVRSGAISMIVVDSVAAL
TPKSELEGDMGDHSVGVHARLMSQAMRKLTGSISRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIG
SVKDRDEIVGNSTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDERIGQGRENAKTFL
RENQHFAIEIEDKIRAAHGLDFDGAPKKPGKEDDALLED

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=57667 OAN307_RS18090 WP_015501027.1 3536417..3537496(-) (recA) [Octadecabacter antarcticus 307]
ATGGCAACGGCAGAGCTATTAAAGATGACAGACAAGAAATCAGCAGACAAGCAAAAGGCGCTCGATTCGGCGCTGGCACA
GATCGAACGTCAGTTCGGCAAGGGGTCGATCATGACGTTGGGCGGCAGTGCCGTGCAAGAGATCGAAAGCACGTCAACGG
GCTCGCTTGGATTGGACATAGCGCTTGGTATTGGGGGCATCCCGAAGGGACGCGTCGTTGAAATTTACGGGCCGGAATCG
TCTGGTAAAACCACGCTAACGCTGCATTGCCTTGCAGAAGAGCAGAAAAAAGGTGGGGTATGCGCCTTTATCGACGCAGA
GCACGCGCTGGACCCGGGCTATGCCAAAAAGCTTGGCGTTAACCTTGATGATCTACTGATTTCGCAACCCGACACTGGCG
AGCAGGCCTTAGAGATTGTCGACACGTTGGTACGCTCTGGCGCGATATCAATGATTGTGGTCGATTCTGTTGCTGCCCTG
ACGCCGAAATCCGAACTTGAAGGCGACATGGGTGATCATTCTGTCGGCGTTCACGCCCGACTGATGAGCCAGGCGATGCG
CAAGCTGACTGGATCTATCAGCCGCACCAAGTGTACAGTTATCTTCATCAACCAAATCCGGATGAAAATCGGGGTTATGT
TCGGCTCTCCGGAGACGACGACCGGTGGTAACGCGCTGAAATTCTATTCTTCCGTCCGTCTGGATATTCGCCGCATCGGG
TCTGTTAAGGATCGCGATGAGATCGTTGGCAACAGCACCAGAGTAAAAGTTGTCAAAAACAAGGTCGCGCCACCGTTCAA
GGTGGTAGAATTTGACATCATGTATGGCGAAGGCATTTCCAAGTTGGGCGAACTGGTCGATATGGGTGTCAAAGCCGGCA
TTGTTGAAAAGTCCGGCTCATGGTTCTCATATGGTGATGAACGCATCGGACAGGGCCGTGAAAACGCCAAAACATTCCTG
CGAGAAAACCAACATTTTGCAATCGAGATTGAGGACAAAATCCGCGCAGCGCACGGGCTTGATTTTGACGGCGCACCCAA
GAAGCCTGGCAAAGAAGACGACGCACTGCTCGAAGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M9RBC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

71.386

92.479

0.66
  recA Neisseria gonorrhoeae MS11

68.182

91.922

0.627
  recA Neisseria gonorrhoeae strain FA1090

68.182

91.922

0.627
  recA Neisseria gonorrhoeae MS11

68.182

91.922

0.627
  recA Glaesserella parasuis strain SC1401

69.592

88.858

0.618
  recA Pseudomonas stutzeri DSM 10701

68.847

89.415

0.616
  recA Acinetobacter baumannii D1279779

68.75

89.136

0.613
  recA Acinetobacter baylyi ADP1

68.438

89.136

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.361

91.086

0.604
  recA Helicobacter pylori 26695

65.06

92.479

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.759

92.479

0.599
  recA Helicobacter pylori strain NCTC11637

64.458

92.479

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

64.848

91.922

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.562

89.136

0.593
  recA Vibrio cholerae strain A1552

66.562

89.136

0.593
  recA Lactococcus lactis subsp. cremoris KW2

62.426

94.15

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

60.997

94.986

0.579
  recA Streptococcus mitis NCTC 12261

58.028

98.886

0.574
  recA Streptococcus mitis SK321

57.91

98.607

0.571
  recA Streptococcus pneumoniae R6

59.587

94.429

0.563
  recA Streptococcus pneumoniae TIGR4

59.587

94.429

0.563
  recA Streptococcus pneumoniae Rx1

59.587

94.429

0.563
  recA Streptococcus pneumoniae D39

59.587

94.429

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.05

93.872

0.554
  recA Streptococcus mutans UA159

59.05

93.872

0.554
  recA Streptococcus pyogenes NZ131

58.929

93.593

0.552

Multiple sequence alignment