Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OA238_RS07545 Genome accession   NC_020908
Coordinates   1440186..1441301 (+) Length   371 a.a.
NCBI ID   WP_015494732.1    Uniprot ID   M9RP24
Organism   Octadecabacter arcticus 238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435186..1446301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OA238_RS07515 (OA238_c13760) tnpC 1435575..1437269 (+) 1695 WP_051076421.1 IS66 family transposase -
  OA238_RS32600 - 1437378..1437620 (+) 243 WP_051076404.1 hypothetical protein -
  OA238_RS29880 - 1437835..1438008 (+) 174 Protein_1499 DDE-type integrase/transposase/recombinase -
  OA238_RS07530 (OA238_c13780) - 1438084..1438609 (-) 526 Protein_1500 transposase -
  OA238_RS34685 - 1439024..1439191 (-) 168 Protein_1501 sigma factor -
  OA238_RS34945 - 1439126..1439398 (+) 273 WP_420806482.1 hypothetical protein -
  OA238_RS07540 (OA238_c13800) - 1439395..1439952 (-) 558 WP_015494731.1 hypothetical protein -
  OA238_RS07545 (OA238_c13810) recA 1440186..1441301 (+) 1116 WP_015494732.1 recombinase RecA Machinery gene
  OA238_RS07550 (OA238_c13820) alaS 1441444..1444098 (+) 2655 WP_015494733.1 alanine--tRNA ligase -
  OA238_RS07555 (OA238_c13830) - 1444318..1445385 (+) 1068 WP_015494734.1 IS630 family transposase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39791.48 Da        Isoelectric Point: 6.5096

>NTDB_id=57657 OA238_RS07545 WP_015494732.1 1440186..1441301(+) (recA) [Octadecabacter arcticus 238]
MATAELLKMTDKKSADKQKALDSALAQIERQFGKGSIMTLGGNAIQEIESTSTGSLGLDIALGIGGIPKGRVVEIYGPES
SGKTTLTLHCLAEEQKKGGVCAFVDAEHALDPGYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSMIVVDSVAAL
TPKSELEGDMGDHSVGVHARLMSQAMRKLTGSISRTKCTVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIG
SVKDRDEIVGNSTRVKVVKNKVAPPFKQVEFDIMYGEGISKLGELVDMGVKAGIVEKSGSWFSYGDERIGQGRENAKTFL
RENPHFANEIEDKIRAAHGLDFDGATKKDCATKKDGAAKKPGKEDDALLED

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=57657 OA238_RS07545 WP_015494732.1 1440186..1441301(+) (recA) [Octadecabacter arcticus 238]
ATGGCAACGGCAGAGCTCCTAAAGATGACAGACAAGAAATCAGCGGACAAACAAAAAGCGCTCGATTCGGCGCTGGCCCA
GATCGAACGTCAGTTCGGCAAGGGATCGATCATGACGTTGGGCGGCAATGCTATTCAAGAGATCGAAAGCACGTCGACGG
GGTCACTTGGCTTGGACATCGCGCTTGGAATTGGCGGCATCCCGAAGGGACGCGTCGTTGAAATTTACGGGCCTGAATCG
TCGGGCAAAACTACGCTGACGCTGCATTGTCTCGCGGAAGAGCAGAAAAAAGGTGGCGTTTGTGCGTTTGTCGACGCAGA
GCACGCGCTTGATCCCGGCTATGCCAAAAAGCTTGGGGTGAACCTTGATGAGCTTTTGATTTCGCAGCCCGATACGGGTG
AGCAGGCGCTAGAGATTGTCGATACGCTGGTCCGCTCCGGCGCGGTCTCGATGATTGTTGTCGACTCCGTTGCAGCCCTG
ACGCCGAAATCCGAACTTGAAGGCGACATGGGCGATCATTCTGTCGGCGTTCATGCCCGCTTGATGAGCCAAGCAATGCG
CAAGCTGACTGGATCCATCAGCCGCACCAAATGTACCGTTATCTTCATCAATCAGATCCGGATGAAAATTGGCGTTATGT
TCGGCTCGCCCGAAACAACGACAGGCGGAAACGCGTTGAAATTCTACTCTTCTGTGCGTCTGGATATTCGCCGCATCGGA
TCCGTTAAGGATCGCGATGAGATCGTTGGCAACAGCACTCGAGTAAAGGTGGTCAAGAACAAGGTCGCGCCACCGTTCAA
GCAGGTCGAATTCGACATTATGTATGGCGAAGGCATCTCTAAGTTGGGCGAATTGGTCGATATGGGCGTCAAAGCGGGCA
TCGTTGAAAAGTCCGGCTCATGGTTTTCCTATGGAGATGAACGCATCGGGCAGGGCCGTGAAAACGCCAAGACCTTCCTG
CGTGAAAACCCACACTTCGCCAACGAGATCGAGGATAAAATTCGCGCAGCGCACGGACTTGATTTTGACGGCGCAACCAA
AAAAGACTGCGCAACCAAAAAAGACGGCGCAGCTAAAAAGCCGGGCAAAGAAGACGACGCGCTTCTGGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M9RP24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

70.571

89.757

0.633
  recA Neisseria gonorrhoeae MS11

68.788

88.949

0.612
  recA Neisseria gonorrhoeae MS11

68.788

88.949

0.612
  recA Neisseria gonorrhoeae strain FA1090

68.788

88.949

0.612
  recA Pseudomonas stutzeri DSM 10701

69.782

86.523

0.604
  recA Glaesserella parasuis strain SC1401

70.219

85.984

0.604
  recA Acinetobacter baylyi ADP1

68.125

86.253

0.588
  recA Acinetobacter baumannii D1279779

68.125

86.253

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.361

88.14

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.258

87.871

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.5

86.253

0.582
  recA Vibrio cholerae strain A1552

67.5

86.253

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

65.152

88.949

0.58
  recA Helicobacter pylori 26695

65.231

87.601

0.571
  recA Streptococcus pneumoniae Rx1

58.082

98.383

0.571
  recA Streptococcus pneumoniae D39

58.082

98.383

0.571
  recA Streptococcus pneumoniae R6

58.082

98.383

0.571
  recA Streptococcus pneumoniae TIGR4

58.082

98.383

0.571
  recA Lactococcus lactis subsp. cremoris KW2

62.13

91.105

0.566
  recA Streptococcus mitis NCTC 12261

58.659

96.496

0.566
  recA Helicobacter pylori strain NCTC11637

64.615

87.601

0.566
  recA Streptococcus mitis SK321

58.38

96.496

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

60.588

91.644

0.555
  recA Streptococcus mutans UA159

57.835

94.609

0.547
  recA Streptococcus pyogenes NZ131

59.226

90.566

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.05

90.836

0.536

Multiple sequence alignment