Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KP626_RS02120 Genome accession   NZ_CP076563
Coordinates   417867..418907 (+) Length   346 a.a.
NCBI ID   WP_395977898.1    Uniprot ID   -
Organism   Christensenella sp. MSJ-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 412867..423907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP626_RS02105 (KP626_02105) rimO 414409..415725 (+) 1317 WP_395977892.1 30S ribosomal protein S12 methylthiotransferase RimO -
  KP626_RS02110 (KP626_02110) pgsA 415722..416588 (+) 867 WP_395977894.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KP626_RS02115 (KP626_02115) - 416607..417851 (+) 1245 WP_395977896.1 competence/damage-inducible protein A -
  KP626_RS02120 (KP626_02120) recA 417867..418907 (+) 1041 WP_395977898.1 recombinase RecA Machinery gene
  KP626_RS02125 (KP626_02125) rny 419104..420645 (+) 1542 WP_395978915.1 ribonuclease Y -
  KP626_RS02130 (KP626_02130) - 420777..421916 (+) 1140 WP_395977900.1 glycosyltransferase family 4 protein -
  KP626_RS02135 (KP626_02135) - 422016..422963 (+) 948 WP_395977902.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37298.65 Da        Isoelectric Point: 5.3370

>NTDB_id=576418 KP626_RS02120 WP_395977898.1 417867..418907(+) (recA) [Christensenella sp. MSJ-20]
MEKQKALDIALLNIEKKFGKGAVMKLGESPVADISYIPTGCLDLDLALGVGGLPRGRIIEIYGPESSGKTTVALHCVAQA
QKMGGMAAFIDAEHALDPVYAQKLGVNIDELYVSQPDTGEQALEICEALVRSGAIDIVVVDSVAALVPRAEIEGDMGDSH
VGLQARLMSQALRKLAGAISKSNSVVIFINQLREKVGVMFGNPETTSGGRALKFYASVRLDIRRGEQLKQGSEAIGNRTR
AKVVKNKVAPPFKTAEFDMIYGEGISREGSIIDVGLSKDILQRSGSWFSYEGNRIAQGRENVRQYLKENPQVADEIEAKI
RALLAAEKKPNQPDADEQPEDAPQAP

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=576418 KP626_RS02120 WP_395977898.1 417867..418907(+) (recA) [Christensenella sp. MSJ-20]
ATGGAAAAACAAAAAGCCCTGGATATCGCCCTATTGAACATCGAAAAGAAGTTCGGCAAGGGGGCCGTCATGAAGCTGGG
GGAATCCCCCGTAGCCGACATCTCCTATATTCCAACTGGATGTTTGGACCTGGACCTGGCTCTAGGGGTTGGCGGGCTTC
CCCGCGGCCGTATCATTGAGATCTACGGACCGGAGTCCTCGGGCAAAACCACCGTGGCCCTCCACTGTGTGGCCCAGGCC
CAGAAGATGGGCGGCATGGCCGCCTTTATCGATGCGGAGCATGCTCTGGATCCGGTCTATGCCCAGAAGCTGGGGGTAAA
TATCGATGAACTCTATGTCTCTCAGCCCGATACCGGGGAACAGGCTCTGGAGATCTGCGAGGCCCTGGTCCGCAGTGGTG
CCATCGATATCGTGGTGGTGGACAGCGTGGCGGCTCTGGTGCCCCGCGCAGAAATCGAGGGGGATATGGGGGACTCCCAT
GTGGGTCTTCAGGCTAGGCTCATGTCCCAGGCCCTTCGAAAACTGGCGGGAGCCATCAGCAAATCCAACTCCGTGGTCAT
CTTCATCAACCAGCTTCGGGAGAAGGTAGGGGTTATGTTCGGCAACCCCGAAACCACCAGCGGTGGCCGCGCCCTCAAGT
TCTACGCCAGCGTCCGGCTGGACATCCGCCGTGGCGAGCAGCTAAAGCAGGGGAGCGAGGCCATCGGCAACCGCACCCGT
GCCAAGGTGGTCAAAAACAAGGTTGCTCCGCCCTTTAAAACGGCGGAATTCGATATGATCTACGGCGAGGGGATCTCCCG
GGAAGGCAGCATTATAGATGTCGGCCTCAGCAAGGATATCCTCCAGCGTAGCGGCTCCTGGTTCTCCTATGAGGGCAACC
GGATCGCCCAGGGACGGGAAAACGTCCGACAGTATCTGAAGGAAAATCCCCAGGTGGCCGATGAAATCGAAGCCAAGATC
CGGGCCCTCCTGGCAGCGGAAAAGAAGCCCAATCAACCCGATGCGGATGAGCAGCCCGAGGATGCTCCCCAGGCGCCGTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

73.75

92.486

0.682
  recA Neisseria gonorrhoeae MS11

66.86

99.422

0.665
  recA Neisseria gonorrhoeae MS11

66.86

99.422

0.665
  recA Neisseria gonorrhoeae strain FA1090

66.86

99.422

0.665
  recA Latilactobacillus sakei subsp. sakei 23K

63.143

100

0.639
  recA Streptococcus pyogenes NZ131

66.975

93.642

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.759

95.954

0.621
  recA Acinetobacter baylyi ADP1

62.757

98.555

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.832

97.977

0.616
  recA Acinetobacter baumannii D1279779

62.353

98.266

0.613
  recA Glaesserella parasuis strain SC1401

64.242

95.376

0.613
  recA Streptococcus mutans UA159

65.123

93.642

0.61
  recA Helicobacter pylori 26695

61.721

97.399

0.601
  recA Helicobacter pylori strain NCTC11637

61.721

97.399

0.601
  recA Pseudomonas stutzeri DSM 10701

64.596

93.064

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.286

93.064

0.598
  recA Vibrio cholerae strain A1552

64.286

93.064

0.598
  recA Ralstonia pseudosolanacearum GMI1000

63.11

94.798

0.598
  recA Streptococcus mitis NCTC 12261

63.889

93.642

0.598
  recA Streptococcus mitis SK321

63.889

93.642

0.598
  recA Streptococcus pneumoniae TIGR4

63.692

93.931

0.598
  recA Streptococcus pneumoniae Rx1

63.692

93.931

0.598
  recA Streptococcus pneumoniae D39

63.692

93.931

0.598
  recA Streptococcus pneumoniae R6

63.692

93.931

0.598
  recA Lactococcus lactis subsp. cremoris KW2

62.462

93.931

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.963

94.22

0.584