Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KP625_RS03530 Genome accession   NZ_CP076562
Coordinates   775334..776362 (-) Length   342 a.a.
NCBI ID   WP_238299409.1    Uniprot ID   -
Organism   Eubacterium sp. MSJ-33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 770334..781362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP625_RS03505 (KP625_03500) xerD 770758..771645 (-) 888 WP_238299403.1 site-specific tyrosine recombinase XerD -
  KP625_RS03510 (KP625_03505) - 771818..772294 (-) 477 WP_238299404.1 hypothetical protein -
  KP625_RS03515 (KP625_03510) - 772433..772987 (-) 555 WP_238299406.1 NUDIX hydrolase -
  KP625_RS03520 (KP625_03515) rny 773179..774669 (-) 1491 WP_370641436.1 ribonuclease Y -
  KP625_RS03525 (KP625_03520) - 774871..775365 (-) 495 WP_238299408.1 regulatory protein RecX -
  KP625_RS03530 (KP625_03525) recA 775334..776362 (-) 1029 WP_238299409.1 recombinase RecA Machinery gene
  KP625_RS03535 (KP625_03530) - 776747..777493 (+) 747 WP_238299410.1 helix-turn-helix domain-containing protein -
  KP625_RS03540 (KP625_03535) - 777496..779910 (-) 2415 WP_238299411.1 GH36-type glycosyl hydrolase domain-containing protein -
  KP625_RS03545 (KP625_03540) - 780377..780835 (-) 459 WP_238299412.1 Hsp20/alpha crystallin family protein -
  KP625_RS03550 (KP625_03545) - 780995..781270 (-) 276 WP_238299413.1 hypothetical protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36825.12 Da        Isoelectric Point: 4.9517

>NTDB_id=576402 KP625_RS03530 WP_238299409.1 775334..776362(-) (recA) [Eubacterium sp. MSJ-33]
MASEEKMKALDAALAQIEKQYGKGSVMKLGDQSANMGIDVVPTGSLSLDLALGLGGMPRGRIIEIYGPESSGKTTVALHV
VAEVQKMGGIAGFIDAEHALDPTYAAHIGVDIDNLYISQPDNGEQALEITETMVRSGAVDVIIVDSVAALVPKAEIDGEM
GDSHVGLHARLMSQALRKLTGIISKSNCVVIFINQLREKVGVMFGNPETTTGGRALKFYASVRLDVRRIETLKVGGEVVG
NRTRVKVVKNKVAPPFKEAEFDIMFGKGISKEGDILDLAVLHDIINKAGAWYSYNGEKIGQGRENTKLYLANNPEVMEEI
EQQVRNKCGIGVDAEQTENEES

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=576402 KP625_RS03530 WP_238299409.1 775334..776362(-) (recA) [Eubacterium sp. MSJ-33]
ATGGCAAGCGAAGAAAAGATGAAAGCATTGGATGCGGCACTGGCGCAGATTGAGAAGCAGTATGGTAAGGGTTCTGTGAT
GAAGCTCGGAGATCAGTCCGCAAATATGGGAATTGATGTAGTTCCGACAGGTTCTCTGAGTCTGGATCTGGCACTTGGAC
TCGGCGGTATGCCAAGAGGACGTATTATTGAGATTTATGGCCCGGAGTCAAGTGGTAAGACAACGGTTGCATTGCATGTT
GTTGCAGAAGTACAGAAGATGGGTGGTATTGCAGGATTTATTGATGCAGAGCATGCACTCGATCCGACTTATGCGGCTCA
CATTGGCGTTGATATTGATAACCTGTATATTTCACAGCCGGATAACGGTGAGCAGGCATTGGAGATTACAGAGACGATGG
TTCGTTCCGGTGCGGTAGATGTAATTATTGTGGACTCTGTGGCAGCACTTGTACCGAAGGCAGAGATTGACGGAGAGATG
GGTGATTCACATGTTGGTCTGCATGCGAGATTGATGTCTCAGGCACTTCGGAAGCTGACCGGAATTATCAGTAAGTCCAA
TTGTGTGGTTATCTTTATTAATCAGCTTCGTGAGAAGGTAGGCGTGATGTTTGGTAACCCGGAGACAACAACCGGTGGAC
GTGCATTGAAGTTCTATGCATCCGTTCGTCTGGATGTACGTCGGATTGAGACACTGAAGGTTGGCGGCGAAGTCGTTGGT
AACCGTACAAGAGTCAAAGTTGTAAAGAATAAGGTTGCGCCACCATTTAAGGAAGCTGAGTTTGATATTATGTTTGGTAA
GGGTATTTCCAAGGAAGGTGATATTCTGGATCTGGCTGTTTTGCATGATATCATCAACAAGGCAGGTGCGTGGTACTCTT
ACAATGGTGAGAAGATCGGACAGGGACGTGAGAATACAAAGCTCTATCTTGCGAATAATCCGGAAGTGATGGAAGAGATC
GAGCAGCAGGTACGAAATAAGTGTGGGATTGGCGTAGATGCAGAACAGACAGAGAACGAAGAGTCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis SK321

65.015

100

0.652
  recA Acinetobacter baumannii D1279779

65.588

99.415

0.652
  recA Bacillus subtilis subsp. subtilis str. 168

68.098

95.322

0.649
  recA Streptococcus mitis NCTC 12261

65.774

98.246

0.646
  recA Streptococcus pneumoniae TIGR4

64.62

100

0.646
  recA Streptococcus pneumoniae Rx1

64.62

100

0.646
  recA Streptococcus pneumoniae D39

64.62

100

0.646
  recA Streptococcus pneumoniae R6

64.62

100

0.646
  recA Latilactobacillus sakei subsp. sakei 23K

63.768

100

0.643
  recA Pseudomonas stutzeri DSM 10701

66.975

94.737

0.635
  recA Streptococcus pyogenes NZ131

65.152

96.491

0.629
  recA Streptococcus mutans UA159

62.682

100

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

96.784

0.626
  recA Glaesserella parasuis strain SC1401

66.254

94.444

0.626
  recA Neisseria gonorrhoeae strain FA1090

64.939

95.906

0.623
  recA Neisseria gonorrhoeae MS11

64.939

95.906

0.623
  recA Neisseria gonorrhoeae MS11

64.939

95.906

0.623
  recA Lactococcus lactis subsp. cremoris KW2

63.582

97.953

0.623
  recA Ralstonia pseudosolanacearum GMI1000

67.516

91.813

0.62
  recA Acinetobacter baylyi ADP1

65.432

94.737

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.634

95.906

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.907

94.152

0.611
  recA Vibrio cholerae strain A1552

64.907

94.152

0.611
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

94.444

0.602
  recA Helicobacter pylori strain NCTC11637

62.385

95.614

0.596
  recA Helicobacter pylori 26695

62.385

95.614

0.596