Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KOM03_RS13795 Genome accession   NZ_CP076450
Coordinates   2735719..2736762 (+) Length   347 a.a.
NCBI ID   WP_060561677.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2730719..2741762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS13765 (KOM03_13765) - 2730731..2731459 (+) 729 WP_060561678.1 SDR family oxidoreductase -
  KOM03_RS13770 (KOM03_13770) - 2731535..2731792 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  KOM03_RS13775 (KOM03_13775) - 2731920..2732711 (+) 792 WP_007409819.1 YmfK family protein -
  KOM03_RS13780 (KOM03_13780) - 2732730..2733626 (+) 897 WP_007409820.1 RodZ domain-containing protein -
  KOM03_RS13785 (KOM03_13785) pgsA 2733699..2734280 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KOM03_RS13790 (KOM03_13790) cinA 2734298..2735548 (+) 1251 WP_007409822.1 competence/damage-inducible protein A Machinery gene
  KOM03_RS13795 (KOM03_13795) recA 2735719..2736762 (+) 1044 WP_060561677.1 recombinase RecA Machinery gene
  KOM03_RS13800 (KOM03_13800) - 2736930..2738111 (+) 1182 WP_007409824.1 serine hydrolase domain-containing protein -
  KOM03_RS13805 (KOM03_13805) rny 2738404..2739963 (+) 1560 WP_003154140.1 ribonuclease Y -
  KOM03_RS13810 (KOM03_13810) - 2740024..2740818 (+) 795 WP_003154137.1 TIGR00282 family metallophosphoesterase -
  KOM03_RS13815 (KOM03_13815) spoVS 2741018..2741278 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37966.18 Da        Isoelectric Point: 4.7494

>NTDB_id=575486 KOM03_RS13795 WP_060561677.1 2735719..2736762(+) (recA) [Bacillus velezensis strain GMEKP1]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKHGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREYYGLDNNGVTDKAEEVQEEMELEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=575486 KOM03_RS13795 WP_060561677.1 2735719..2736762(+) (recA) [Bacillus velezensis strain GMEKP1]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGAGAAAAAACGGATACAAGAATTTCAACGGTGCCAAGCGGTTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTATACGGACCTGAAAGCTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCTGAGCATGCTCTTGATCCTGTTTACGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTTCTGCTTTCTCAGCCGGATACGGGAGAGCAGGCGCTAGAGATTGCTGAAGCGCTGGTGCGAAGCG
GAGCTGTTGATATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGATTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGCCGCGCGCTGA
AATTCTATTCTTCCGTGCGCCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCATGGCAACGACGTCATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTGGATATCGTGCAAAAAAGCGGTTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGTCAGGGCCGTGAAAACGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAGGAACAA
ATCCGTGAATATTACGGTTTAGACAATAACGGTGTAACGGACAAAGCGGAAGAAGTTCAGGAAGAGATGGAATTAGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

98.198

95.965

0.942
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

94.236

0.706
  recA Streptococcus mutans UA159

65.805

100

0.66
  recA Streptococcus pneumoniae D39

68.485

95.101

0.651
  recA Streptococcus pneumoniae TIGR4

68.485

95.101

0.651
  recA Streptococcus pneumoniae R6

68.485

95.101

0.651
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus pneumoniae Rx1

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Helicobacter pylori 26695

62.974

98.847

0.622
  recA Helicobacter pylori strain NCTC11637

62.974

98.847

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.443

94.236

0.617
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Glaesserella parasuis strain SC1401

60.29

99.424

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.303

94.236

0.597
  recA Acinetobacter baylyi ADP1

59.71

99.424

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Acinetobacter baumannii D1279779

62.305

92.507

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.219

0.559