Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KMZ15_RS01965 Genome accession   NZ_CP076444
Coordinates   477392..478492 (+) Length   366 a.a.
NCBI ID   WP_223693620.1    Uniprot ID   -
Organism   Mycoavidus sp. HKI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472392..483492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ15_RS01945 (KMZ15_01925) mnmA 473138..474238 (+) 1101 WP_223693611.1 tRNA 2-thiouridine(34) synthase MnmA -
  KMZ15_RS01950 (KMZ15_01930) purB 474416..475813 (+) 1398 WP_223693613.1 adenylosuccinate lyase -
  KMZ15_RS01955 (KMZ15_01935) - 475940..476323 (+) 384 WP_223693615.1 CCDC90 family protein -
  KMZ15_RS01960 (KMZ15_01940) - 476703..477269 (+) 567 WP_223693617.1 cytochrome b -
  KMZ15_RS01965 (KMZ15_01945) recA 477392..478492 (+) 1101 WP_223693620.1 recombinase RecA Machinery gene
  KMZ15_RS01970 (KMZ15_01950) recX 478532..478981 (+) 450 WP_223693623.1 recombination regulator RecX -
  KMZ15_RS01975 (KMZ15_01955) sucC 479033..480193 (+) 1161 WP_223693626.1 ADP-forming succinate--CoA ligase subunit beta -
  KMZ15_RS01980 (KMZ15_01960) sucD 480300..481181 (+) 882 WP_223693629.1 succinate--CoA ligase subunit alpha -
  KMZ15_RS01985 (KMZ15_01965) - 481228..481923 (+) 696 WP_223693631.1 TerC family protein -
  KMZ15_RS01990 (KMZ15_01970) - 482099..482689 (+) 591 WP_223693633.1 pilin -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39204.92 Da        Isoelectric Point: 5.2055

>NTDB_id=575293 KMZ15_RS01965 WP_223693620.1 477392..478492(+) (recA) [Mycoavidus sp. HKI]
MEESKKGQAGLTAEKGKALAAALAQIEKQFGKGSIMRLGDGEVVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKLGGTCAFIDAEHALDVQYAAKLGINVSDLLIAQPDTGEQALEITDALVRSSSVDLIVIDSVAALV
PKAEIEGDMGDSLPGLQARLMSQALRKLTGTINRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
IKKADSVIGSETRVKVVKNKVAPPFREAIFDILYGEGISREGEIIDLGVQAKIVEKAGAWYSYNGERAGQGKDNAREYLR
ENPEIAREIENKVRISFGVVAMPTTDETQENTETKTPKRQSSPILG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=575293 KMZ15_RS01965 WP_223693620.1 477392..478492(+) (recA) [Mycoavidus sp. HKI]
ATGGAAGAAAGCAAGAAAGGCCAAGCGGGCTTAACGGCTGAAAAAGGCAAAGCGCTTGCCGCTGCGCTGGCGCAGATTGA
AAAGCAATTTGGCAAAGGCTCAATCATGCGCCTGGGCGATGGGGAAGTGGTTGAAGATATTCAAGTCGTCTCCACTGGCT
CGCTGGGGCTTGATATTGCGCTTGGGGTAGGCGGTTTGCCTCGCGGTCGTGTGGTTGAAATCTACGGGCCGGAATCCTCG
GGCAAAACCACTCTCACTTTACAAGTTATTGCTGAGATGCAAAAACTCGGGGGCACCTGCGCATTTATCGATGCAGAACA
CGCGTTGGACGTCCAATATGCAGCAAAGCTTGGCATCAACGTGTCTGATCTTTTGATTGCACAGCCTGATACAGGTGAGC
AGGCGCTTGAGATTACAGATGCATTGGTGCGCTCGAGTTCGGTTGATTTAATTGTCATTGATTCCGTCGCCGCGCTGGTA
CCCAAGGCTGAAATTGAGGGGGATATGGGCGACTCTTTGCCTGGCCTGCAAGCGCGCTTGATGTCACAGGCATTGCGTAA
GCTTACTGGGACCATCAACCGGACAAACTGCCTAGTCATTTTTATCAATCAAATTCGGATGAAAATCGGGGTGATGTTTG
GTAGTCCGGAAACCACAACGGGCGGCAATGCATTGAAGTTCTATGCATCAGTACGGCTTGATATCCGCCGCATTGGCTCA
ATCAAAAAAGCGGATTCGGTCATTGGCTCTGAGACGCGGGTGAAAGTAGTCAAAAATAAAGTTGCGCCGCCTTTTCGTGA
AGCTATATTTGACATCCTATATGGTGAAGGTATTTCGCGTGAAGGCGAAATCATTGACCTTGGCGTGCAAGCGAAAATTG
TTGAAAAGGCTGGCGCATGGTACAGCTATAATGGCGAGCGCGCTGGGCAGGGCAAAGACAATGCGCGTGAATATCTGCGT
GAAAACCCAGAGATTGCCCGTGAAATTGAAAACAAAGTTCGCATTTCATTTGGCGTGGTGGCCATGCCTACAACGGATGA
AACTCAAGAAAACACTGAAACTAAAACGCCAAAGCGGCAATCATCGCCAATTCTTGGGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.965

93.443

0.803
  recA Neisseria gonorrhoeae strain FA1090

70.115

95.082

0.667
  recA Neisseria gonorrhoeae MS11

70.115

95.082

0.667
  recA Neisseria gonorrhoeae MS11

70.115

95.082

0.667
  recA Pseudomonas stutzeri DSM 10701

73.939

90.164

0.667
  recA Acinetobacter baylyi ADP1

71.386

92.623

0.661
  recA Glaesserella parasuis strain SC1401

69.501

93.169

0.648
  recA Acinetobacter baumannii D1279779

72.5

87.432

0.634
  recA Vibrio cholerae strain A1552

71.875

87.432

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.875

87.432

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.118

92.896

0.596
  recA Helicobacter pylori 26695

63.265

93.716

0.593
  recA Helicobacter pylori strain NCTC11637

62.974

93.716

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.644

89.071

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

89.344

0.574
  recA Streptococcus mutans UA159

59.429

95.628

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.35

93.716

0.566
  recA Streptococcus pneumoniae Rx1

58.192

96.721

0.563
  recA Streptococcus pneumoniae D39

58.192

96.721

0.563
  recA Streptococcus pneumoniae R6

58.192

96.721

0.563
  recA Streptococcus pneumoniae TIGR4

58.192

96.721

0.563
  recA Streptococcus mitis NCTC 12261

61.446

90.71

0.557
  recA Streptococcus mitis SK321

61.145

90.71

0.555
  recA Streptococcus pyogenes NZ131

61.702

89.891

0.555
  recA Lactococcus lactis subsp. cremoris KW2

59.639

90.71

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

87.705

0.533