Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KNJ79_RS07345 Genome accession   NZ_CP076394
Coordinates   1572051..1573130 (+) Length   359 a.a.
NCBI ID   WP_317153415.1    Uniprot ID   -
Organism   Sphingopyxis indica strain MC4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567051..1578130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNJ79_RS07335 (KNJ79_07310) - 1568838..1571216 (+) 2379 WP_317153875.1 response regulator -
  KNJ79_RS07340 (KNJ79_07315) - 1571206..1571556 (+) 351 WP_089214189.1 response regulator -
  KNJ79_RS07345 (KNJ79_07320) recA 1572051..1573130 (+) 1080 WP_317153415.1 recombinase RecA Machinery gene
  KNJ79_RS07350 (KNJ79_07325) - 1573415..1574041 (+) 627 WP_317153416.1 glutathione S-transferase -
  KNJ79_RS07355 (KNJ79_07330) - 1574031..1574621 (+) 591 WP_317153417.1 hypothetical protein -
  KNJ79_RS07360 (KNJ79_07335) alaS 1574694..1577339 (+) 2646 WP_317153418.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38480.99 Da        Isoelectric Point: 5.0540

>NTDB_id=574923 KNJ79_RS07345 WP_317153415.1 1572051..1573130(+) (recA) [Sphingopyxis indica strain MC4]
MAGQLSLVESGKSVNGTDRQKALDAALAQIDRAFGKGSVMKLGSKEAMQVEAVSTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHCIAEAQKTGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKDRDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSVRIGQGRENAKN
FLLENPELMQRLETAIRGRTEAVAEEMMTGPDADDDSDL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=574923 KNJ79_RS07345 WP_317153415.1 1572051..1573130(+) (recA) [Sphingopyxis indica strain MC4]
ATGGCCGGACAATTGTCACTCGTCGAATCGGGGAAATCAGTGAACGGAACGGACAGGCAGAAGGCGCTCGACGCCGCCTT
GGCGCAGATCGACCGCGCCTTCGGCAAGGGCTCGGTGATGAAATTGGGCTCGAAGGAGGCAATGCAGGTCGAGGCGGTTT
CGACCGGCTCGCTCGGGCTCGACATCGCGCTGGGGGTCGGCGGACTGCCGCGCGGCCGCGTCATCGAAATCTATGGCCCC
GAAAGCTCGGGCAAGACCACCCTCGCGCTGCACTGCATCGCCGAGGCGCAAAAGACCGGCGGCACCGCCGCCTTCGTCGA
CGCCGAACATGCGCTCGATCCCGTCTATGCGAAGAAGCTGGGGGTCGACATCGACGAGCTGATCGTGTCGCAGCCCGACA
CGGGTGAACAAGCGCTCGAAATCGTCGATACGCTCGTGCGTTCGAACGCGATCGACGTGCTCGTCGTCGACTCGGTCGCC
GCGCTCGTCCCGCGCGCCGAAATCGAGGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCGCGGCTGATGTCGCAGTC
GCTGCGCAAGCTCACCGGCTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGCAATCCCGAGACGACGACCGGCGGCAACGCGCTCAAATTCTACGCCTCGGTCCGCCTCGACATCCGCCGC
ACCGGGCAGATCAAGGACCGCGACGAGATCGTCGGCAACACGACGCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAATTCGACATCATGTACGGCCAGGGCATTTCGAAGATCGGCGAAATCCTCGACCTCGGCGTCAAGG
CCGGGCTCGTCGAGAAATCGGGCGCCTGGTTCAGCTATGATTCGGTGCGCATCGGCCAGGGCCGCGAGAATGCGAAGAAT
TTTCTGTTGGAAAATCCTGAACTTATGCAGCGACTCGAGACGGCGATCCGCGGCCGTACCGAGGCGGTGGCCGAAGAGAT
GATGACCGGCCCCGATGCGGACGACGATAGCGATCTTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

67.449

94.986

0.641
  recA Glaesserella parasuis strain SC1401

65.714

97.493

0.641
  recA Vibrio cholerae strain A1552

68.06

93.315

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.06

93.315

0.635
  recA Acinetobacter baylyi ADP1

64.723

95.543

0.618
  recA Neisseria gonorrhoeae MS11

68.847

89.415

0.616
  recA Neisseria gonorrhoeae MS11

68.847

89.415

0.616
  recA Neisseria gonorrhoeae strain FA1090

68.847

89.415

0.616
  recA Acinetobacter baumannii D1279779

68.438

89.136

0.61
  recA Ralstonia pseudosolanacearum GMI1000

71.104

85.794

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

67.29

89.415

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.257

92.201

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.127

94.429

0.596
  recA Helicobacter pylori strain NCTC11637

62.798

93.593

0.588
  recA Helicobacter pylori 26695

62.5

93.593

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

64.375

89.136

0.574
  recA Streptococcus pneumoniae R6

59.078

96.657

0.571
  recA Streptococcus pneumoniae Rx1

59.078

96.657

0.571
  recA Streptococcus pneumoniae D39

59.078

96.657

0.571
  recA Streptococcus pneumoniae TIGR4

59.078

96.657

0.571
  recA Streptococcus pyogenes NZ131

59.824

94.986

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.585

91.365

0.563
  recA Streptococcus mitis NCTC 12261

61.656

90.808

0.56
  recA Streptococcus mitis SK321

61.656

90.808

0.56
  recA Streptococcus mutans UA159

58.651

94.986

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.509

90.808

0.54