Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KNZ78_RS02885 | Genome accession | NZ_CP076377 |
| Coordinates | 582581..583627 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain S-0352 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 557199..621367 | 582581..583627 | within | 0 |
Gene organization within MGE regions
Location: 557199..621367
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KNZ78_RS02770 (KNZ78_02770) | rimP | 559615..560076 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| KNZ78_RS02775 (KNZ78_02775) | nusA | 560106..561260 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| KNZ78_RS02780 (KNZ78_02780) | rnpM | 561267..561548 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| KNZ78_RS02785 (KNZ78_02785) | - | 561538..561849 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| KNZ78_RS02790 (KNZ78_02790) | infB | 561871..563811 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| KNZ78_RS02795 (KNZ78_02795) | rbfA | 563854..564234 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| KNZ78_RS02800 (KNZ78_02800) | - | 564215..564892 (+) | 678 | Protein_552 | DHH family phosphoesterase | - |
| KNZ78_RS02805 (KNZ78_02805) | tnpB | 565532..566650 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| KNZ78_RS02810 (KNZ78_02810) | - | 566768..567073 (+) | 306 | Protein_554 | DHH family phosphoesterase | - |
| KNZ78_RS02815 (KNZ78_02815) | truB | 567086..567991 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| KNZ78_RS02820 (KNZ78_02820) | - | 568122..569051 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| KNZ78_RS02825 (KNZ78_02825) | rpsO | 569155..569412 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| KNZ78_RS02830 (KNZ78_02830) | - | 569652..570497 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| KNZ78_RS02835 (KNZ78_02835) | pnp | 570622..572733 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| KNZ78_RS02840 (KNZ78_02840) | - | 572999..573742 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| KNZ78_RS02845 (KNZ78_02845) | - | 573900..575147 (+) | 1248 | WP_009902409.1 | M16 family metallopeptidase | - |
| KNZ78_RS02850 (KNZ78_02850) | - | 575182..575427 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| KNZ78_RS02855 (KNZ78_02855) | dapG | 575437..576660 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| KNZ78_RS02860 (KNZ78_02860) | - | 576773..577507 (+) | 735 | WP_021364422.1 | ClpP family protease | - |
| KNZ78_RS02865 (KNZ78_02865) | - | 577630..580041 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| KNZ78_RS02870 (KNZ78_02870) | mnmH | 580044..581102 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| KNZ78_RS02875 (KNZ78_02875) | - | 581096..581764 (+) | 669 | WP_021402035.1 | TRAM domain-containing protein | - |
| KNZ78_RS02880 (KNZ78_02880) | pgsA | 581751..582293 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| KNZ78_RS02885 (KNZ78_02885) | recA | 582581..583627 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| KNZ78_RS02890 (KNZ78_02890) | rny | 583803..585344 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| KNZ78_RS02895 (KNZ78_02895) | - | 585979..587760 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| KNZ78_RS02900 (KNZ78_02900) | lepB | 587842..588372 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| KNZ78_RS02905 (KNZ78_02905) | - | 588412..589236 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| KNZ78_RS02910 (KNZ78_02910) | - | 589493..590401 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| KNZ78_RS02915 (KNZ78_02915) | purB | 590545..591990 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| KNZ78_RS02920 (KNZ78_02920) | - | 592301..592753 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| KNZ78_RS02925 (KNZ78_02925) | - | 593165..594742 (+) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| KNZ78_RS02930 (KNZ78_02930) | - | 594890..595642 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| KNZ78_RS02935 (KNZ78_02935) | - | 595775..597121 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| KNZ78_RS02940 (KNZ78_02940) | - | 597233..598429 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| KNZ78_RS02945 (KNZ78_02945) | galT | 598814..599764 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| KNZ78_RS02950 (KNZ78_02950) | - | 599925..600677 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| KNZ78_RS02955 (KNZ78_02955) | - | 600769..601545 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| KNZ78_RS02960 (KNZ78_02960) | - | 601860..603758 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| KNZ78_RS02965 (KNZ78_02965) | - | 603886..605007 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| KNZ78_RS02970 (KNZ78_02970) | - | 605206..605538 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| KNZ78_RS02975 (KNZ78_02975) | - | 605525..606583 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| KNZ78_RS02980 (KNZ78_02980) | - | 606576..607646 (+) | 1071 | WP_021364425.1 | DUF4097 family beta strand repeat-containing protein | - |
| KNZ78_RS02985 (KNZ78_02985) | - | 607748..608284 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| KNZ78_RS02990 (KNZ78_02990) | - | 608400..609107 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| KNZ78_RS02995 (KNZ78_02995) | - | 609109..609825 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| KNZ78_RS03000 (KNZ78_03000) | - | 609827..610585 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| KNZ78_RS03005 (KNZ78_03005) | - | 610720..612108 (+) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| KNZ78_RS03010 (KNZ78_03010) | - | 612184..613005 (-) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| KNZ78_RS03015 (KNZ78_03015) | - | 613256..614410 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| KNZ78_RS03020 (KNZ78_03020) | - | 614593..614793 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| KNZ78_RS03025 (KNZ78_03025) | - | 615214..615642 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| KNZ78_RS03030 (KNZ78_03030) | - | 615785..616540 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| KNZ78_RS03035 (KNZ78_03035) | - | 617241..617747 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| KNZ78_RS03040 (KNZ78_03040) | - | 617829..618149 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| KNZ78_RS03045 (KNZ78_03045) | - | 618318..618515 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| KNZ78_RS03050 (KNZ78_03050) | - | 618620..619060 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| KNZ78_RS03055 (KNZ78_03055) | - | 619309..619752 (+) | 444 | WP_003438413.1 | phage tail terminator family protein | - |
| KNZ78_RS03060 (KNZ78_03060) | - | 619757..620821 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| KNZ78_RS03065 (KNZ78_03065) | - | 620835..621263 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=574866 KNZ78_RS02885 WP_021364420.1 582581..583627(+) (recA) [Clostridioides difficile strain S-0352]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=574866 KNZ78_RS02885 WP_021364420.1 582581..583627(+) (recA) [Clostridioides difficile strain S-0352]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.