Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KN217_RS08000 Genome accession   NZ_CP076348
Coordinates   1609286..1610344 (+) Length   352 a.a.
NCBI ID   WP_102829446.1    Uniprot ID   A0A8E2QC62
Organism   Stutzerimonas stutzeri strain DN36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1604286..1615344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KN217_RS07965 (KN217_07920) - 1605051..1605377 (+) 327 WP_301620312.1 hypothetical protein -
  KN217_RS07970 (KN217_07925) - 1605387..1606454 (+) 1068 WP_301620617.1 outer membrane protein -
  KN217_RS07975 (KN217_07930) - 1606568..1606753 (+) 186 WP_301620313.1 hypothetical protein -
  KN217_RS07980 (KN217_07935) - 1606799..1607767 (+) 969 WP_301620314.1 hypothetical protein -
  KN217_RS07985 (KN217_07940) - 1607819..1608175 (+) 357 WP_301620315.1 hypothetical protein -
  KN217_RS07990 (KN217_07945) - 1608211..1608525 (+) 315 WP_301620316.1 hypothetical protein -
  KN217_RS07995 (KN217_07950) - 1608704..1609201 (+) 498 WP_301620317.1 CinA family protein -
  KN217_RS08000 (KN217_07955) recA 1609286..1610344 (+) 1059 WP_102829446.1 recombinase RecA Machinery gene
  KN217_RS08005 (KN217_07960) recX 1610350..1610814 (+) 465 WP_213663112.1 recombination regulator RecX -
  KN217_RS08010 (KN217_07965) - 1610919..1612010 (-) 1092 WP_213663113.1 LOG family protein -
  KN217_RS08015 (KN217_07970) - 1612135..1613544 (-) 1410 WP_165594994.1 MBL fold metallo-hydrolase RNA specificity domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37417.86 Da        Isoelectric Point: 5.5400

>NTDB_id=574813 KN217_RS08000 WP_102829446.1 1609286..1610344(+) (recA) [Stutzerimonas stutzeri strain DN36]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
AHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKYLEDNPEVGREIEQ
QIRDKLLVVSGNKAAGANAGAVVSEDLADVDL

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=574813 KN217_RS08000 WP_102829446.1 1609286..1610344(+) (recA) [Stutzerimonas stutzeri strain DN36]
ATGGACGAGAACAAGAAGCGCGCCTTGGCCGCAGCTCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCGCGGTGATGCG
CATGGGCGACCACGATCGCCAGGCGATTCCGGCGATTTCCACCGGCTCGCTGGGGCTGGACATCGCGCTGGGTATTGGTG
GTCTGCCGAAAGGCCGTATCGTCGAAATCTACGGCCCGGAGTCCTCGGGTAAAACCACGTTGACCCTGTCAGTGATCGCC
GAAGCGCAGAAGATGGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTGGACCCGGATTACGCCGGCAAGCTGGG
CGTCAACGTCGATGATCTGCTGGTATCGCAGCCCGATACCGGTGAGCAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCGGTGGACGTGATCATTGTCGACTCCGTGGCAGCGCTGGTGCCCAAGGCGGAAATCGAAGGCGAGATGGGCGAC
GCCCACGTCGGTCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGCGGTAATGCGC
TGAAGTTCTACGCCTCGGTGCGTCTGGACATCCGCCGCACTGGCGCGGTGAAGGAAGGTGACGAGGTGGTCGGTAGCGAG
ACCCGCGTCAAAGTGGTGAAGAACAAGGTGGCGCCTCCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTATCGCAACGGTGAGATCATCGATCTCGGCGTGCAGCAGGGCCTGGTCGAGAAATCCGGCGCCTGGTACGCCTACAAGG
GCAACAAAATCGGTCAGGGCAAAGCCAATGCCGCCAAGTATCTCGAGGACAACCCCGAGGTAGGTCGCGAGATCGAACAG
CAGATTCGTGACAAGCTGCTGGTGGTTTCCGGCAACAAGGCAGCCGGCGCCAACGCGGGCGCCGTGGTCAGCGAAGACCT
GGCCGACGTCGACCTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

93.466

100

0.935
  recA Acinetobacter baumannii D1279779

73.295

100

0.733
  recA Acinetobacter baylyi ADP1

75.522

95.17

0.719
  recA Glaesserella parasuis strain SC1401

70.201

99.148

0.696
  recA Vibrio cholerae strain A1552

74.618

92.898

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

92.898

0.693
  recA Ralstonia pseudosolanacearum GMI1000

74.92

88.352

0.662
  recA Neisseria gonorrhoeae MS11

71.296

92.045

0.656
  recA Neisseria gonorrhoeae MS11

71.296

92.045

0.656
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.045

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.976

94.886

0.588
  recA Helicobacter pylori strain NCTC11637

62.997

92.898

0.585
  recA Helicobacter pylori 26695

62.385

92.898

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.193

0.568
  recA Streptococcus mitis SK321

57.514

98.295

0.565
  recA Streptococcus mitis NCTC 12261

58.209

95.17

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

91.193

0.551
  recA Streptococcus pneumoniae Rx1

57.91

95.17

0.551
  recA Streptococcus pneumoniae D39

57.91

95.17

0.551
  recA Streptococcus pneumoniae R6

57.91

95.17

0.551
  recA Streptococcus pneumoniae TIGR4

57.91

95.17

0.551
  recA Streptococcus mutans UA159

59.385

92.33

0.548
  recA Streptococcus pyogenes NZ131

58.537

93.182

0.545
  recA Lactococcus lactis subsp. cremoris KW2

57.895

91.761

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

92.614

0.52