Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PCNPT3_RS12065 Genome accession   NC_020802
Coordinates   2737056..2738111 (-) Length   351 a.a.
NCBI ID   WP_015466136.1    Uniprot ID   M4UAQ4
Organism   Psychromonas sp. CNPT3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2732056..2743111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCNPT3_RS12050 (PCNPT3_11590) xapA 2732780..2733613 (+) 834 WP_015466133.1 xanthosine phosphorylase -
  PCNPT3_RS12055 (PCNPT3_11595) emrD 2733765..2734973 (-) 1209 WP_015466134.1 multidrug efflux MFS transporter EmrD -
  PCNPT3_RS12060 (PCNPT3_11600) - 2735223..2736668 (-) 1446 WP_015466135.1 leucyl aminopeptidase -
  PCNPT3_RS12065 (PCNPT3_11605) recA 2737056..2738111 (-) 1056 WP_015466136.1 recombinase RecA Machinery gene
  PCNPT3_RS12070 (PCNPT3_11610) - 2738234..2738722 (-) 489 WP_015466137.1 CinA family protein -
  PCNPT3_RS12075 (PCNPT3_11615) mutS 2738775..2741333 (+) 2559 WP_041771308.1 DNA mismatch repair protein MutS -
  PCNPT3_RS12080 (PCNPT3_11620) - 2741381..2741959 (-) 579 WP_015466139.1 nucleoside triphosphate pyrophosphohydrolase family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37809.73 Da        Isoelectric Point: 7.2674

>NTDB_id=57376 PCNPT3_RS12065 WP_015466136.1 2737056..2738111(-) (recA) [Psychromonas sp. CNPT3]
MSQDKNKDKALAAALGQIEKQFGKGSIMRLGDGNAMMDIEAVSTGSLGLDIALGIGGLPCGRVVEIYGPESSGKTTLTLQ
VIAEAQKKGKTCAFIDAEHALDPIYAKKLGVNIDELLISQPDTGEQALEICDMLIRSGAVGVVVIDSVAALTPKAEIEGD
MGDSHMGLQARLMSQALRKLTGSIKQTNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGDEIV
GNETRVKVVKNKVSPPFKQAEFQILYGHGINRFGELIDLGVKNDLVEKAGSWYSYQGVKIGQGKSNACKHFLENPKLAAE
LELKLRDILLPKPEEDEKAADKPVDKKESAL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=57376 PCNPT3_RS12065 WP_015466136.1 2737056..2738111(-) (recA) [Psychromonas sp. CNPT3]
ATGAGTCAGGATAAAAATAAAGATAAAGCACTAGCGGCAGCGTTAGGACAAATTGAAAAGCAATTTGGTAAAGGCTCTAT
TATGCGTCTCGGTGACGGGAATGCGATGATGGATATTGAAGCTGTATCTACTGGCTCATTAGGTTTAGATATAGCACTCG
GCATAGGTGGACTACCTTGTGGACGTGTGGTAGAAATTTATGGGCCAGAAAGCTCAGGCAAAACAACACTCACATTACAA
GTGATTGCAGAAGCACAAAAGAAAGGCAAAACATGTGCCTTTATTGATGCTGAGCATGCACTTGATCCTATTTACGCTAA
AAAATTAGGTGTAAATATAGATGAGTTACTTATTTCTCAACCTGATACGGGTGAGCAAGCGTTAGAGATTTGTGACATGT
TAATTCGCTCTGGCGCAGTCGGTGTCGTGGTGATCGATTCGGTTGCTGCATTAACACCAAAAGCTGAAATTGAAGGCGAT
ATGGGCGATTCTCATATGGGCTTACAAGCACGTTTAATGTCACAAGCATTACGTAAATTAACCGGTAGTATTAAACAAAC
TAACACCATGGTTATCTTTATTAACCAGATCCGTATGAAAATTGGTGTTATGTTCGGTAATCCAGAAACGACAACGGGTG
GTAATGCACTTAAATTTTACGCTTCTGTTCGTTTGGATATCCGCCGTATTGGCGCGGTTAAAAATGGTGATGAGATCGTC
GGTAATGAGACGCGCGTTAAAGTCGTTAAAAATAAAGTATCACCGCCGTTTAAACAGGCTGAATTCCAAATTCTTTATGG
CCATGGTATTAACCGCTTTGGTGAATTAATCGATTTGGGTGTGAAAAATGATTTAGTAGAGAAAGCGGGATCTTGGTATT
CGTACCAAGGCGTTAAAATTGGCCAAGGTAAGAGCAATGCTTGTAAGCATTTTCTTGAGAATCCAAAATTAGCAGCTGAG
CTTGAATTAAAACTTCGTGATATTTTACTGCCGAAACCGGAAGAAGATGAAAAAGCGGCAGATAAGCCTGTTGATAAGAA
AGAAAGCGCACTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M4UAQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

78.55

94.302

0.741
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.55

94.302

0.741
  recA Pseudomonas stutzeri DSM 10701

75.841

93.162

0.707
  recA Acinetobacter baumannii D1279779

75.535

93.162

0.704
  recA Acinetobacter baylyi ADP1

72.861

96.581

0.704
  recA Glaesserella parasuis strain SC1401

73.556

93.732

0.689
  recA Ralstonia pseudosolanacearum GMI1000

73.817

90.313

0.667
  recA Neisseria gonorrhoeae MS11

66.092

99.145

0.655
  recA Neisseria gonorrhoeae MS11

66.092

99.145

0.655
  recA Neisseria gonorrhoeae strain FA1090

66.092

99.145

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.286

95.726

0.615
  recA Helicobacter pylori strain NCTC11637

61.988

97.436

0.604
  recA Helicobacter pylori 26695

61.404

97.436

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.831

90.883

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

63.665

91.738

0.584
  recA Streptococcus mutans UA159

58.239

100

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

60.355

96.296

0.581
  recA Streptococcus pneumoniae R6

62.346

92.308

0.576
  recA Streptococcus mitis SK321

62.346

92.308

0.576
  recA Streptococcus pneumoniae TIGR4

62.346

92.308

0.576
  recA Streptococcus pneumoniae Rx1

62.346

92.308

0.576
  recA Streptococcus pneumoniae D39

62.346

92.308

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.468

93.162

0.573
  recA Streptococcus mitis NCTC 12261

62.037

92.308

0.573
  recA Streptococcus pyogenes NZ131

61.42

92.308

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.259

92.308

0.547

Multiple sequence alignment