Detailed information NTG0057376

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: JMUB1235_RS08605
• Genome accession: NZ_AP017629
• Coordinates: 1726486..1727592 (+)
• Length: 368 a.a.
• NCBI ID: WP_011185108.1
• Uniprot ID: Q5X9A5
• Organism: Streptococcus pyogenes strain JMUB1235
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1721486..1732592

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMUB1235_RS08580 (JMUB1235_1712)	pgsA	1721595..1722137 (-)	543	WP_002991432.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
JMUB1235_RS08585 (JMUB1235_1713)	-	1722151..1723176 (-)	1026	WP_011285332.1	helix-turn-helix domain-containing protein	-
JMUB1235_RS08590 (JMUB1235_1714)	yfmH	1723226..1724515 (-)	1290	WP_002991436.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
JMUB1235_RS08595 (JMUB1235_1715)	yfmF	1724517..1725761 (-)	1245	WP_030127514.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
JMUB1235_RS08600 (JMUB1235_1716)	yaaA	1726071..1726484 (+)	414	WP_011889257.1	S4 domain-containing protein YaaA	-
JMUB1235_RS08605 (JMUB1235_1717)	recF	1726486..1727592 (+)	1107	WP_011185108.1	DNA replication/repair protein RecF	Machinery gene
JMUB1235_RS08610 (JMUB1235_1718)	-	1727648..1728511 (-)	864	WP_002992310.1	GRP family sugar transporter	-
JMUB1235_RS08615 (JMUB1235_1719)	guaB	1728713..1730194 (-)	1482	WP_002991454.1	IMP dehydrogenase	-
JMUB1235_RS08620 (JMUB1235_1720)	trpS	1730502..1731524 (-)	1023	WP_002991455.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41795.71 Da
• Isoelectric Point: 7.8294

>NTDB_id=57376 JMUB1235_RS08605 WP_011185108.1 1726486..1727592(+) (recF) [Streptococcus pyogenes strain JMUB1235]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide

• Length: 1107 bp

>NTDB_id=57376 JMUB1235_RS08605 WP_011185108.1 1726486..1727592(+) (recF) [Streptococcus pyogenes strain JMUB1235]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTGAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTCCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-360)

3D structure

• AlphaFold DB: Q5X9A5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	62.842	99.457	0.625
recF	Bacillus subtilis subsp. subtilis str. 168	45.722	100	0.465