Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KME82_RS09215 Genome accession   NZ_CP076103
Coordinates   2221593..2222621 (+) Length   342 a.a.
NCBI ID   WP_056108547.1    Uniprot ID   A0A0Q8J9R8
Organism   Lysobacter capsici strain NF87_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2216593..2227621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME82_RS09190 (KME82_09190) - 2217350..2218438 (+) 1089 WP_215498234.1 hypothetical protein -
  KME82_RS09195 (KME82_09195) - 2218933..2219430 (+) 498 WP_215499024.1 CinA family protein -
  KME82_RS09200 (KME82_09200) - 2219561..2220502 (-) 942 WP_215498235.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  KME82_RS09205 (KME82_09205) lexA 2220652..2221299 (+) 648 WP_036111519.1 transcriptional repressor LexA -
  KME82_RS09210 (KME82_09210) - 2221316..2221555 (+) 240 WP_215498236.1 hypothetical protein -
  KME82_RS09215 (KME82_09215) recA 2221593..2222621 (+) 1029 WP_056108547.1 recombinase RecA Machinery gene
  KME82_RS26560 recX 2223195..2223671 (+) 477 Protein_1821 recombination regulator RecX -
  KME82_RS09225 (KME82_09225) alaS 2223835..2226468 (+) 2634 WP_215498237.1 alanine--tRNA ligase -
  KME82_RS09230 (KME82_09230) csrA 2226613..2226816 (+) 204 WP_036111509.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36879.55 Da        Isoelectric Point: 5.0813

>NTDB_id=571837 KME82_RS09215 WP_056108547.1 2221593..2222621(+) (recA) [Lysobacter capsici strain NF87_2]
MDENKKRALTAALSQIDKQFGKGSVMRMGDRAVEITEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKKGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSAAVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSGTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASIRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCGDERIGQGKENARQYLKENPEMAARL
EAALREKFVPTDAPREEEVSED

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=571837 KME82_RS09215 WP_056108547.1 2221593..2222621(+) (recA) [Lysobacter capsici strain NF87_2]
ATGGACGAGAACAAGAAGCGCGCCCTTACCGCCGCTCTGAGCCAGATCGACAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGCGGTCGAGATCACCGAGGTCATCGGTACCGGCTCGCTGATGCTCGACATCGCGCTGGGCATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATCTACGGTCCGGAATCCTCGGGCAAGACCACCTTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGAAGGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTATGCCGCCAAGCTCGG
CGTCAACGTCGACGACCTGCTGCTGTCGCAGCCCGACACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CGGCCGCGGTCGACATCGTCGTCATCGACTCGGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCTCGGGCACCCT
GGTGGTGTTCATCAACCAGCTGCGCATGAAGATCGGCGTAATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGATCCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTCGCCCCGCCGTTCAAGCAGGTCGTCACCGAAATCCTCTACGGCGA
AGGCATCTCGCGCGAAGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCCGGCGCCTGGTACAGCT
GCGGCGACGAGCGCATCGGCCAGGGCAAGGAAAACGCGCGCCAGTACCTCAAGGAAAACCCCGAGATGGCCGCTCGCCTG
GAAGCGGCGTTGCGCGAGAAGTTCGTGCCCACCGACGCCCCGCGCGAAGAGGAAGTCAGCGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q8J9R8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

69.971

100

0.702
  recA Ralstonia pseudosolanacearum GMI1000

72.727

96.491

0.702
  recA Acinetobacter baylyi ADP1

70.213

96.199

0.675
  recA Vibrio cholerae strain A1552

70.552

95.322

0.673
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.552

95.322

0.673
  recA Acinetobacter baumannii D1279779

69.486

96.784

0.673
  recA Neisseria gonorrhoeae MS11

67.791

95.322

0.646
  recA Neisseria gonorrhoeae MS11

67.791

95.322

0.646
  recA Neisseria gonorrhoeae strain FA1090

67.791

95.322

0.646
  recA Glaesserella parasuis strain SC1401

67.802

94.444

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.923

95.029

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.763

97.368

0.611
  recA Streptococcus pneumoniae TIGR4

60.117

99.708

0.599
  recA Streptococcus pneumoniae Rx1

60.117

99.708

0.599
  recA Streptococcus pneumoniae D39

60.117

99.708

0.599
  recA Streptococcus pneumoniae R6

60.117

99.708

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

95.029

0.596
  recA Helicobacter pylori strain NCTC11637

62.27

95.322

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

60.597

97.953

0.594
  recA Helicobacter pylori 26695

61.963

95.322

0.591
  recA Streptococcus mitis SK321

58.48

100

0.585
  recA Streptococcus mitis NCTC 12261

58.651

99.708

0.585
  recA Streptococcus mutans UA159

57.225

100

0.579
  recA Streptococcus pyogenes NZ131

58.788

96.491

0.567
  recA Lactococcus lactis subsp. cremoris KW2

59.692

95.029

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.537

95.906

0.561