Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KLP38_RS02405 Genome accession   NZ_CP076060
Coordinates   517338..518399 (+) Length   353 a.a.
NCBI ID   WP_215529296.1    Uniprot ID   -
Organism   Cupriavidus sp. EM10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 512338..523399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KLP38_RS02385 (KLP38_02385) - 512404..514095 (-) 1692 WP_215529294.1 MFS transporter -
  KLP38_RS32855 (KLP38_02390) - 514221..514757 (-) 537 WP_215529295.1 DUF4212 domain-containing protein -
  KLP38_RS02395 (KLP38_02395) - 514784..516271 (-) 1488 WP_225934344.1 sensor histidine kinase -
  KLP38_RS02400 (KLP38_02400) - 516370..517058 (-) 689 Protein_485 response regulator -
  KLP38_RS02405 (KLP38_02405) recA 517338..518399 (+) 1062 WP_215529296.1 recombinase RecA Machinery gene
  KLP38_RS02410 (KLP38_02410) recX 518493..518969 (+) 477 WP_215529297.1 recombination regulator RecX -
  KLP38_RS02415 (KLP38_02415) - 519344..520014 (+) 671 Protein_488 DUF2889 domain-containing protein -
  KLP38_RS02420 (KLP38_02420) sucC 520104..521270 (+) 1167 WP_066739433.1 ADP-forming succinate--CoA ligase subunit beta -
  KLP38_RS02425 (KLP38_02425) sucD 521329..522210 (+) 882 WP_215529298.1 succinate--CoA ligase subunit alpha -
  KLP38_RS02430 (KLP38_02430) - 522533..523227 (+) 695 Protein_491 TerC family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37458.86 Da        Isoelectric Point: 4.9367

>NTDB_id=571742 KLP38_RS02405 WP_215529296.1 517338..518399(+) (recA) [Cupriavidus sp. EM10]
MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGDGDVEQDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDEVVGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGDKIGQGKDNAREYLRE
NPDIAAEIENKVRAALGVAPTNTALAAPAEIED

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=571742 KLP38_RS02405 WP_215529296.1 517338..518399(+) (recA) [Cupriavidus sp. EM10]
ATGGACGACAAGAAGGCCGGCGCCGGCGTAAGCGCTGAGAAGCAGAAGGCGCTTGCCGCCGCGCTCTCCCAGATCGAGAA
GCAGTTCGGCAAGGGCTCGATCATGCGCCTGGGCGATGGCGACGTCGAACAGGATATCCAGGTGGTGTCCACCGGATCGC
TGGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCGGAATCGTCGGGC
AAGACCACGCTGACGCTGCAGGTCGTTGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCGTTCATCGACGCGGAACACGC
CCTCGACGTGCAGTACGCCGGCAAGCTGGGCGTGAACGTGGGCGACCTGCTGATCTCCCAGCCGGACACCGGCGAGCAAG
CACTGGAAATCACCGACGCGCTCGTGCGCTCGGGCTCGATCGACCTGATCGTGATCGACTCGGTGGCCGCGCTGGTGCCG
AAGGCCGAAATCGAAGGCGAGATGGGCGATTCGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCACTGCGCAAGCT
GACCGGCACAATCAAGCGTACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATTGGTGTGATGTTTGGGT
CGCCTGAAACGACGACCGGCGGTAACGCGCTGAAGTTCTACGCTTCGGTGCGTCTGGATATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGAGGTCGTAGGTAACGAAACCAAGGTCAAGGTGGTCAAGAACAAGGTCTCGCCGCCGTTCCGCGAGGC
GTTCTTCGACATCCTCTACGGCCAGGGCATCTCGCGCCAGGGCGAAATCATCGACCTGGGCGTGGATGCCAAGATCGTGG
AGAAGTCGGGCGCGTGGTACAGCTACAACGGCGACAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATACCTGCGCGAG
AATCCGGACATCGCCGCCGAGATCGAGAACAAGGTGCGTGCAGCGCTGGGCGTAGCCCCGACGAACACTGCACTGGCCGC
GCCGGCCGAGATCGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.552

100

0.856
  recA Pseudomonas stutzeri DSM 10701

75.668

95.467

0.722
  recA Acinetobacter baumannii D1279779

72.647

96.317

0.7
  recA Neisseria gonorrhoeae MS11

74.468

93.201

0.694
  recA Neisseria gonorrhoeae MS11

74.468

93.201

0.694
  recA Neisseria gonorrhoeae strain FA1090

74.468

93.201

0.694
  recA Vibrio cholerae strain A1552

73.054

94.618

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.054

94.618

0.691
  recA Acinetobacter baylyi ADP1

75.232

91.501

0.688
  recA Glaesserella parasuis strain SC1401

70.623

95.467

0.674
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

93.201

0.609
  recA Helicobacter pylori 26695

64.742

93.201

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.337

92.351

0.603
  recA Helicobacter pylori strain NCTC11637

64.438

93.201

0.601
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

92.635

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

63.914

92.635

0.592
  recA Streptococcus mitis NCTC 12261

62.236

93.768

0.584
  recA Streptococcus mitis SK321

62.236

93.768

0.584
  recA Streptococcus pneumoniae Rx1

62.236

93.768

0.584
  recA Streptococcus pneumoniae D39

62.236

93.768

0.584
  recA Streptococcus pneumoniae R6

62.236

93.768

0.584
  recA Streptococcus pneumoniae TIGR4

62.236

93.768

0.584
  recA Lactococcus lactis subsp. cremoris KW2

61.934

93.768

0.581
  recA Streptococcus mutans UA159

61.515

93.484

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

92.068

0.572
  recA Streptococcus pyogenes NZ131

60.79

93.201

0.567