Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KB891_RS02420 Genome accession   NZ_CP076049
Coordinates   516726..517787 (+) Length   353 a.a.
NCBI ID   WP_008646499.1    Uniprot ID   A0A132HI42
Organism   Cupriavidus metallidurans strain YL2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 511726..522787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB891_RS02400 (KB891_02400) - 511848..513545 (-) 1698 WP_017514350.1 MFS transporter -
  KB891_RS02405 (KB891_02405) - 513884..514204 (-) 321 WP_024569470.1 DUF4212 domain-containing protein -
  KB891_RS02410 (KB891_02410) - 514201..515775 (-) 1575 WP_017514348.1 sensor histidine kinase -
  KB891_RS02415 (KB891_02415) - 515797..516486 (-) 690 WP_011515340.1 response regulator transcription factor -
  KB891_RS02420 (KB891_02420) recA 516726..517787 (+) 1062 WP_008646499.1 recombinase RecA Machinery gene
  KB891_RS02425 (KB891_02425) recX 517916..518386 (+) 471 WP_008646500.1 recombination regulator RecX -
  KB891_RS02430 (KB891_02430) - 518726..519397 (+) 672 WP_008646501.1 DUF2889 domain-containing protein -
  KB891_RS02435 (KB891_02435) sucC 519487..520653 (+) 1167 WP_008646502.1 ADP-forming succinate--CoA ligase subunit beta -
  KB891_RS02440 (KB891_02440) sucD 520712..521593 (+) 882 WP_008646503.1 succinate--CoA ligase subunit alpha -
  KB891_RS02445 (KB891_02445) - 521907..522602 (+) 696 WP_008646504.1 TerC family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37482.97 Da        Isoelectric Point: 4.9450

>NTDB_id=571666 KB891_RS02420 WP_008646499.1 516726..517787(+) (recA) [Cupriavidus metallidurans strain YL2]
MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGDGEIEQDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVGNLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDEVVGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKAGAWYSYNGEKIGQGKDNAREYLRE
NPDIADEIENKVRLALGVAPLNTVAGAPAEVEG

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=571666 KB891_RS02420 WP_008646499.1 516726..517787(+) (recA) [Cupriavidus metallidurans strain YL2]
ATGGACGACAAGAAGGCCGGCGCCGGCGTGAGCGCTGAGAAGCAGAAGGCGCTTGCCGCCGCGCTCTCCCAGATTGAGAA
GCAGTTTGGCAAGGGCTCGATCATGCGCCTGGGCGATGGCGAAATCGAACAGGACATCCAGGTAGTGTCCACCGGCTCGC
TGGGGCTGGACATCGCGCTGGGCGTGGGTGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGTCCGGAATCGTCCGGC
AAGACCACGCTGACGCTGCAGGTGGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCGTTCATCGACGCCGAGCACGC
CCTGGATGTCCAATATGCCGGCAAGCTCGGCGTGGACGTCGGCAATCTGCTGATCTCCCAGCCCGATACCGGCGAGCAGG
CCCTGGAAATCACCGACGCTCTGGTGCGCTCGGGTTCGATCGACCTGATCGTGATCGACTCGGTGGCCGCTCTGGTGCCG
AAGGCGGAAATCGAGGGCGAGATGGGTGATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGCACGATCAAGCGTACGAATTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTTGGTT
CGCCTGAAACCACCACCGGCGGTAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGTATCGGCTCGATC
AAGAAGGGCGACGAAGTCGTCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTGTCACCTCCGTTCCGCGAGGC
GTTCTTCGACATCCTCTATGGCCAGGGTATCTCGCGCCAGGGTGAAATCATTGACCTGGGCGTGGACGCCAAGATCGTTG
AGAAGGCCGGTGCCTGGTACAGCTACAACGGCGAAAAGATCGGCCAGGGCAAGGACAACGCACGCGAGTACCTGCGCGAG
AACCCGGACATCGCCGACGAGATCGAGAACAAGGTGCGTCTGGCGCTGGGCGTGGCGCCGCTGAATACCGTGGCGGGCGC
GCCGGCAGAGGTCGAAGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A132HI42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

86.919

97.45

0.847
  recA Pseudomonas stutzeri DSM 10701

74.481

95.467

0.711
  recA Neisseria gonorrhoeae MS11

71.802

97.45

0.7
  recA Neisseria gonorrhoeae MS11

71.802

97.45

0.7
  recA Neisseria gonorrhoeae strain FA1090

71.802

97.45

0.7
  recA Acinetobacter baylyi ADP1

75.851

91.501

0.694
  recA Acinetobacter baumannii D1279779

75.232

91.501

0.688
  recA Glaesserella parasuis strain SC1401

70.623

95.467

0.674
  recA Vibrio cholerae strain A1552

73.375

91.501

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.375

91.501

0.671
  recA Helicobacter pylori 26695

65.046

93.201

0.606
  recA Helicobacter pylori strain NCTC11637

64.742

93.201

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.438

93.201

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.724

92.351

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

92.635

0.592
  recA Streptococcus pneumoniae D39

62.84

93.768

0.589
  recA Streptococcus pneumoniae Rx1

62.84

93.768

0.589
  recA Streptococcus pneumoniae R6

62.84

93.768

0.589
  recA Streptococcus mitis NCTC 12261

62.84

93.768

0.589
  recA Streptococcus pneumoniae TIGR4

62.84

93.768

0.589
  recA Streptococcus mitis SK321

62.236

93.768

0.584
  recA Lactococcus lactis subsp. cremoris KW2

60.947

95.751

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

62.997

92.635

0.584
  recA Streptococcus mutans UA159

62.121

93.484

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

92.068

0.575
  recA Streptococcus pyogenes NZ131

61.398

93.201

0.572