Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   D805_RS03235 Genome accession   NC_020546
Coordinates   910821..912002 (+) Length   393 a.a.
NCBI ID   WP_015450253.1    Uniprot ID   -
Organism   Bifidobacterium thermophilum RBL67     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 905821..917002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D805_RS03215 (D805_0721) pgsA 908342..908983 (+) 642 WP_015450247.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D805_RS03220 (D805_0722) - 908984..909532 (+) 549 WP_015450248.1 CinA family protein -
  D805_RS03225 (D805_0723) - 909598..910113 (+) 516 WP_015450249.1 helix-turn-helix domain-containing protein -
  D805_RS03230 (D805_0724) - 910349..910585 (+) 237 WP_015450250.1 DUF3046 domain-containing protein -
  D805_RS03235 (D805_0727) recA 910821..912002 (+) 1182 WP_015450253.1 recombinase RecA Machinery gene
  D805_RS09080 (D805_0728) - 912009..912740 (+) 732 WP_015450254.1 regulatory protein RecX -
  D805_RS03245 (D805_0729) hpf 913982..914656 (+) 675 WP_015450255.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41301.71 Da        Isoelectric Point: 5.5426

>NTDB_id=57146 D805_RS03235 WP_015450253.1 910821..912002(+) (recA) [Bifidobacterium thermophilum RBL67]
MAQQTKSAKAAGAKAGGAAQESGAHEIDPRRKAALDTALAQVEKSFGKGSAMRLGDRPEQNVEVIPTGSLALDMALGIGG
LPRGRIVEIFGPESSGKTTLALHVVANAQKAGGVAAFIDAEHALDPVYARHLGVDTDSLIVSQPDNGEQALEIADMLIRS
GALDVIVIDSVAALVPKAEIEGDMGDSHVGLQARLMSQALRKMTGALAQANTTAIFINQLREKIGVFFGNPETTTGGKAL
KFYSSVRLDIRRIQTLKNGDEAVGSRTRVKVVKNKMAPPFKSAEFDVLYGEGISKEGSIIDMALQSNVIKKSGSWFTYNG
DQLGQGRENVRKYLKDNPELSDEIETKVKEAFGLIEPTDQFAEDDEAAAAAAPTSGEAGKAAAADSAAASKKA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=57146 D805_RS03235 WP_015450253.1 910821..912002(+) (recA) [Bifidobacterium thermophilum RBL67]
ATGGCACAGCAGACAAAATCGGCCAAAGCGGCGGGCGCCAAAGCTGGCGGGGCCGCCCAGGAATCCGGGGCTCACGAGAT
TGATCCCCGGCGTAAAGCCGCATTGGACACTGCGCTTGCGCAGGTGGAGAAGAGCTTCGGAAAAGGCTCGGCCATGCGTC
TGGGTGATCGTCCGGAGCAGAATGTTGAAGTAATCCCCACTGGTTCACTTGCGCTTGACATGGCCCTCGGCATCGGCGGG
TTGCCGCGCGGCCGTATCGTGGAGATTTTCGGACCGGAATCTTCCGGCAAGACCACGCTTGCGCTGCATGTTGTCGCCAA
CGCGCAGAAGGCGGGTGGTGTCGCCGCGTTCATCGACGCCGAACACGCATTGGATCCGGTGTATGCACGCCATTTGGGGG
TGGACACTGATTCACTGATCGTCTCCCAGCCAGACAACGGCGAGCAGGCATTGGAAATCGCGGATATGCTCATCAGGTCC
GGCGCGCTTGACGTGATCGTCATCGATTCTGTGGCCGCGCTGGTCCCGAAGGCTGAAATCGAAGGCGATATGGGTGACAG
TCATGTCGGTCTTCAGGCGCGTTTGATGAGCCAGGCGTTGCGCAAGATGACCGGCGCCCTTGCACAAGCCAACACCACGG
CGATTTTCATCAATCAGTTGCGCGAGAAAATCGGTGTGTTCTTCGGCAATCCGGAAACTACCACCGGCGGCAAGGCATTG
AAGTTCTATTCGTCGGTGCGTCTTGACATTCGTCGTATTCAAACCCTGAAGAACGGGGACGAAGCCGTCGGCAGCCGTAC
CAGGGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCATTCAAGTCCGCCGAGTTCGACGTGCTCTACGGCGAAGGCATTT
CCAAGGAAGGCTCGATTATCGATATGGCGTTGCAGAGCAATGTCATCAAGAAGTCGGGCTCCTGGTTCACCTACAACGGC
GACCAGTTGGGTCAAGGCCGCGAGAACGTGCGTAAATATCTCAAAGACAATCCCGAGCTGTCCGACGAGATTGAGACCAA
GGTCAAGGAGGCGTTCGGTCTGATTGAGCCGACTGACCAATTTGCTGAGGACGATGAGGCGGCAGCGGCCGCCGCGCCGA
CAAGTGGCGAGGCTGGCAAAGCGGCTGCTGCCGATTCTGCGGCGGCATCGAAAAAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(34-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.706

86.514

0.56
  recA Glaesserella parasuis strain SC1401

60.907

89.822

0.547
  recA Neisseria gonorrhoeae MS11

68.254

80.153

0.547
  recA Neisseria gonorrhoeae strain FA1090

68.254

80.153

0.547
  recA Neisseria gonorrhoeae MS11

68.254

80.153

0.547
  recA Streptococcus mitis NCTC 12261

62.5

87.532

0.547
  recA Vibrio cholerae strain A1552

62.573

87.023

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.573

87.023

0.545
  recA Pseudomonas stutzeri DSM 10701

65.944

82.188

0.542
  recA Streptococcus pneumoniae R6

60.227

89.567

0.539
  recA Streptococcus pneumoniae TIGR4

60.227

89.567

0.539
  recA Streptococcus pneumoniae Rx1

60.227

89.567

0.539
  recA Streptococcus pneumoniae D39

60.227

89.567

0.539
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.877

86.768

0.537
  recA Acinetobacter baumannii D1279779

64.724

82.952

0.537
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.329

83.461

0.537
  recA Bacillus subtilis subsp. subtilis str. 168

64.815

82.443

0.534
  recA Ralstonia pseudosolanacearum GMI1000

66.454

79.644

0.529
  recA Streptococcus pyogenes NZ131

63.03

83.969

0.529
  recA Streptococcus mitis SK321

63.03

83.969

0.529
  recA Streptococcus mutans UA159

63.03

83.969

0.529
  recA Helicobacter pylori 26695

61.89

83.461

0.517
  recA Helicobacter pylori strain NCTC11637

61.89

83.461

0.517
  recA Latilactobacillus sakei subsp. sakei 23K

62.654

82.443

0.517
  recA Lactococcus lactis subsp. cremoris KW2

60.36

84.733

0.511
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

82.188

0.504

Multiple sequence alignment