Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KKZ03_RS19915 Genome accession   NZ_CP076024
Coordinates   4423141..4424169 (-) Length   342 a.a.
NCBI ID   WP_243218495.1    Uniprot ID   -
Organism   Methylobacter sp. S3L5C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4418141..4429169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKZ03_RS19900 (KKZ03_19780) - 4418736..4419965 (-) 1230 WP_243218492.1 aspartate kinase -
  KKZ03_RS19905 (KKZ03_19785) alaS 4419982..4422585 (-) 2604 WP_371744909.1 alanine--tRNA ligase -
  KKZ03_RS19910 (KKZ03_19790) - 4422633..4423151 (-) 519 WP_243218494.1 regulatory protein RecX -
  KKZ03_RS19915 (KKZ03_19795) recA 4423141..4424169 (-) 1029 WP_243218495.1 recombinase RecA Machinery gene
  KKZ03_RS19920 (KKZ03_19800) - 4424439..4425023 (-) 585 WP_243218496.1 tetratricopeptide repeat protein -
  KKZ03_RS19925 (KKZ03_19805) - 4425882..4426445 (-) 564 WP_243218497.1 TetR/AcrR family transcriptional regulator -
  KKZ03_RS19930 (KKZ03_19810) - 4426615..4428738 (+) 2124 WP_243218498.1 molybdopterin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36942.68 Da        Isoelectric Point: 5.8960

>NTDB_id=571360 KKZ03_RS19915 WP_243218495.1 4423141..4424169(-) (recA) [Methylobacter sp. S3L5C]
MDENKKKALGAALMQIEKQFGKGSVMRMGDVAASRDIDVVSTGSLGLDIALGCGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFVDAEHALDPSYAEKIGVNVDELLVSQPDTGEQALEITDMLVRSGAVDVVVIDSVAALTPKAEIEGDMG
DSHMGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGEEVIGN
ETRVKVVKNKVAPPFRQAEFEILYGEGISFMGELVDLGVSYGFIQKAGSWYSYGDEKIGQGKENVKLFLKEHPEKAKEIE
AKIRAEAFKKPVPIIQPVIDEV

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=571360 KKZ03_RS19915 WP_243218495.1 4423141..4424169(-) (recA) [Methylobacter sp. S3L5C]
ATGGATGAGAATAAAAAGAAAGCATTAGGCGCAGCCCTGATGCAGATAGAAAAGCAGTTTGGTAAAGGCTCTGTAATGCG
TATGGGTGATGTGGCAGCTTCCCGTGATATTGATGTAGTCTCTACCGGTTCTTTAGGTTTGGATATCGCTTTGGGCTGTG
GTGGTTTGCCACGTGGTCGCGTGGTTGAAATTTATGGCCCTGAATCATCCGGTAAAACGACACTGACTTTGCAAGTCATC
GCTGAAATGCAAAAACTTGGTGGCACAGCTGCCTTTGTTGATGCCGAACATGCCCTGGATCCAAGTTATGCCGAAAAAAT
CGGTGTTAATGTCGATGAATTACTGGTTTCCCAACCGGATACCGGCGAGCAGGCTCTGGAAATTACCGATATGCTGGTGC
GCTCAGGTGCGGTTGATGTTGTGGTAATCGATTCGGTTGCGGCATTAACGCCTAAAGCCGAAATTGAAGGCGATATGGGC
GACTCTCATATGGGCTTGCAAGCACGTTTGATGTCACAGGCATTAAGAAAATTAACAGGTAATATCAAACGTTCCAATAC
GCTGGTTATTTTTATTAACCAGATCAGGATGAAAATCGGGGTGATGTTCGGTAGTCCGGAAACTACAACCGGCGGTAATG
CACTTAAATTTTATGCTTCTGTACGTTTGGATATACGTCGTATTGGTGCCGTAAAAAAAGGCGAAGAAGTTATTGGTAAT
GAAACCCGGGTAAAGGTCGTAAAAAATAAAGTGGCGCCGCCGTTTAGACAGGCTGAATTTGAGATTTTATACGGCGAAGG
TATTTCGTTTATGGGTGAATTGGTTGATCTTGGCGTCAGCTATGGCTTTATTCAAAAAGCCGGTTCCTGGTATAGTTATG
GGGATGAGAAAATTGGTCAGGGTAAAGAAAATGTAAAACTTTTCTTAAAAGAGCATCCTGAAAAAGCGAAAGAAATTGAA
GCCAAAATAAGAGCCGAGGCATTTAAAAAGCCGGTGCCGATTATTCAACCGGTCATTGATGAAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

73.913

100

0.746
  recA Acinetobacter baylyi ADP1

74.242

96.491

0.716
  recA Neisseria gonorrhoeae strain FA1090

74.154

95.029

0.705
  recA Neisseria gonorrhoeae MS11

74.154

95.029

0.705
  recA Neisseria gonorrhoeae MS11

74.154

95.029

0.705
  recA Acinetobacter baumannii D1279779

73.62

95.322

0.702
  recA Glaesserella parasuis strain SC1401

71.257

97.661

0.696
  recA Ralstonia pseudosolanacearum GMI1000

76.699

90.351

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.84

94.737

0.69
  recA Vibrio cholerae strain A1552

72.84

94.737

0.69
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

95.906

0.646
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.769

95.029

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

66.667

93.86

0.626
  recA Helicobacter pylori strain NCTC11637

65.231

95.029

0.62
  recA Helicobacter pylori 26695

64.923

95.029

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

62.236

96.784

0.602
  recA Streptococcus mutans UA159

62.805

95.906

0.602
  recA Streptococcus pneumoniae D39

62.462

95.029

0.594
  recA Streptococcus pneumoniae R6

62.462

95.029

0.594
  recA Streptococcus pneumoniae Rx1

62.462

95.029

0.594
  recA Streptococcus pneumoniae TIGR4

62.462

95.029

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.346

94.737

0.591
  recA Lactococcus lactis subsp. cremoris KW2

62.154

95.029

0.591
  recA Streptococcus pyogenes NZ131

61.963

95.322

0.591
  recA Streptococcus mitis SK321

61.35

95.322

0.585
  recA Streptococcus mitis NCTC 12261

61.35

95.322

0.585