Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KK111_RS06680 | Genome accession | NZ_CP075684 |
| Coordinates | 1393280..1394326 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain MT4854 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1388490..1439124 | 1393280..1394326 | within | 0 |
Gene organization within MGE regions
Location: 1388490..1439124
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KK111_RS06665 (KK111_06665) | mnmH | 1390098..1391156 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| KK111_RS06670 (KK111_06670) | rimO | 1391150..1392484 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| KK111_RS06675 (KK111_06675) | pgsA | 1392471..1393013 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| KK111_RS06680 (KK111_06680) | recA | 1393280..1394326 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| KK111_RS06685 (KK111_06685) | rny | 1394502..1396043 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| KK111_RS06690 (KK111_06690) | - | 1396353..1398689 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| KK111_RS06695 (KK111_06695) | - | 1399495..1399593 (+) | 99 | Protein_1231 | transposase | - |
| KK111_RS06700 (KK111_06700) | tnpB | 1399595..1400713 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| KK111_RS06705 (KK111_06705) | - | 1401045..1402826 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| KK111_RS06710 (KK111_06710) | lepB | 1402906..1403436 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| KK111_RS06715 (KK111_06715) | - | 1403476..1404300 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| KK111_RS06720 (KK111_06720) | - | 1404557..1405468 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| KK111_RS06725 (KK111_06725) | purB | 1405607..1407052 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| KK111_RS06730 (KK111_06730) | - | 1407353..1407805 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| KK111_RS06735 (KK111_06735) | - | 1408024..1409220 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| KK111_RS06740 (KK111_06740) | galT | 1409605..1410555 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| KK111_RS06745 (KK111_06745) | - | 1410676..1411428 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| KK111_RS06750 (KK111_06750) | - | 1411520..1412296 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| KK111_RS06755 (KK111_06755) | - | 1412611..1414509 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| KK111_RS06760 (KK111_06760) | - | 1414637..1415758 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| KK111_RS06765 (KK111_06765) | - | 1415957..1416289 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| KK111_RS06770 (KK111_06770) | - | 1416276..1417334 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| KK111_RS06775 (KK111_06775) | - | 1417327..1418397 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| KK111_RS06780 (KK111_06780) | - | 1418499..1419035 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| KK111_RS06785 (KK111_06785) | - | 1419155..1419862 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| KK111_RS06790 (KK111_06790) | - | 1419864..1420583 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| KK111_RS06795 (KK111_06795) | - | 1420585..1421355 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| KK111_RS06800 (KK111_06800) | - | 1421489..1422880 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| KK111_RS06805 (KK111_06805) | - | 1422956..1423777 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| KK111_RS06810 (KK111_06810) | - | 1424028..1425182 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| KK111_RS06815 (KK111_06815) | - | 1425365..1425565 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| KK111_RS06820 (KK111_06820) | - | 1425986..1426414 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| KK111_RS06825 (KK111_06825) | - | 1426557..1427312 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| KK111_RS06830 (KK111_06830) | - | 1428013..1428519 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| KK111_RS06835 (KK111_06835) | - | 1428601..1428921 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| KK111_RS06840 (KK111_06840) | - | 1429090..1429287 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| KK111_RS06845 (KK111_06845) | - | 1429391..1429831 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| KK111_RS06850 (KK111_06850) | - | 1430080..1430523 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| KK111_RS06855 (KK111_06855) | - | 1430528..1431592 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| KK111_RS06860 (KK111_06860) | - | 1431606..1432034 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| KK111_RS06865 (KK111_06865) | - | 1432148..1432594 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| KK111_RS06870 (KK111_06870) | - | 1432788..1435241 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| KK111_RS06875 (KK111_06875) | - | 1435241..1435663 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| KK111_RS06880 (KK111_06880) | - | 1435945..1437474 (+) | 1530 | WP_003419653.1 | NlpC/P60 family protein | - |
| KK111_RS06885 (KK111_06885) | - | 1437490..1437816 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| KK111_RS06890 (KK111_06890) | - | 1437816..1438244 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=570146 KK111_RS06680 WP_003419530.1 1393280..1394326(+) (recA) [Clostridioides difficile strain MT4854]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=570146 KK111_RS06680 WP_003419530.1 1393280..1394326(+) (recA) [Clostridioides difficile strain MT4854]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.