Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KKI44_RS10015 Genome accession   NZ_CP075682
Coordinates   2185220..2186221 (+) Length   333 a.a.
NCBI ID   WP_087712199.1    Uniprot ID   A0A202BQP3
Organism   Chryseobacterium sp. ZHDP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180220..2191221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKI44_RS09995 (KKI44_09995) gap 2180830..2181840 (+) 1011 WP_108411166.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  KKI44_RS10000 (KKI44_10000) - 2181921..2182418 (+) 498 WP_214590866.1 hypothetical protein -
  KKI44_RS10005 (KKI44_10005) - 2182861..2183637 (+) 777 WP_214590867.1 response regulator transcription factor -
  KKI44_RS10010 (KKI44_10010) - 2183753..2184949 (+) 1197 WP_214590868.1 oxygenase MpaB family protein -
  KKI44_RS10015 (KKI44_10015) recA 2185220..2186221 (+) 1002 WP_087712199.1 recombinase RecA Machinery gene
  KKI44_RS10020 (KKI44_10020) - 2186289..2189186 (-) 2898 WP_214590869.1 prolyl oligopeptidase family serine peptidase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35877.13 Da        Isoelectric Point: 5.5717

>NTDB_id=570109 KKI44_RS10015 WP_087712199.1 2185220..2186221(+) (recA) [Chryseobacterium sp. ZHDP1]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGENSVDSTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKTGEILDQAVEQGIVKKSGSWFSYEETKLGQGRDAVKDVLKDNPELAE
ELENKIKEELKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=570109 KKI44_RS10015 WP_087712199.1 2185220..2186221(+) (recA) [Chryseobacterium sp. ZHDP1]
ATGAGTAATATAGACGATAAGAAAAAAGCACTGGCTTTAGTGCTGGACAAACTAGATAAAACATACGGAAAGGGAACGGT
AATGACCTTGGGAGAAAATTCCGTAGACAGTACAATTGAGGTAATTCCTTCAGGATCTTTGGGATTGGACATCGCTCTTG
GAGTGGGTGGTTATCCGAGAGGAAGAATCATTGAGATCTACGGTCCGGAATCTTCAGGTAAAACAACTTTAACGCTTCAC
GCGATTGCAGAAGCTCAGAAAGCAGGAGGTATTGCAGCGTTTATTGATGCAGAGCACGCTTTCGACAGAACTTATGCTGC
TAAATTGGGAATCGATCTTGAAAACCTTATTATTTCTCAGCCGGACAACGGAGAACAGGCACTGGAAATTGCTGATAACC
TGATTCGTTCGGGAGCGATTGATATCGTGGTAATTGACTCGGTTGCTGCGCTTACGCCAAAAGCAGAGATCGAAGGGGAA
ATGGGAGATTCTAAAATGGGTCTTCATGCGAGATTAATGTCTCAGGCTTTAAGAAAATTAACGGCAACCATTTCAAGAAC
AAAATGTACGGTTATTTTCATCAACCAGTTGAGAGAGAAAATCGGGGTTATGTTCGGAAATCCTGAAACTACAACGGGGG
GTAACGCTTTGAAATTCTATGCTTCGGTAAGAGTTGACATCAGAAAAGCAAGTGCGCCTATCAAACAGGGTGATGAAGCG
ATCGGAAGTCGTGTGAAAGTGAAAATTGTTAAGAACAAAGTTGCCCCGCCTTTCAAACAGGCAGAATTCGACATCATGTA
TGGTGAAGGGGTTTCTAAAACAGGAGAAATTCTGGATCAGGCTGTAGAACAGGGAATTGTAAAGAAAAGTGGTTCTTGGT
TCAGCTACGAAGAAACAAAGCTTGGACAAGGTCGTGATGCAGTAAAAGATGTCTTAAAAGACAATCCTGAACTTGCGGAA
GAACTGGAAAACAAAATTAAAGAGGAACTTAAGAATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A202BQP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

79.88

100

0.799
  recA Acinetobacter baylyi ADP1

64.742

98.799

0.64
  recA Acinetobacter baumannii D1279779

64.724

97.898

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

98.198

0.631
  recA Glaesserella parasuis strain SC1401

64.11

97.898

0.628
  recA Ralstonia pseudosolanacearum GMI1000

66.454

93.994

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

63.19

97.898

0.619
  recA Helicobacter pylori 26695

62.691

98.198

0.616
  recA Helicobacter pylori strain NCTC11637

62.691

98.198

0.616
  recA Neisseria gonorrhoeae MS11

63.158

96.997

0.613
  recA Neisseria gonorrhoeae strain FA1090

63.158

96.997

0.613
  recA Neisseria gonorrhoeae MS11

63.158

96.997

0.613
  recA Lactococcus lactis subsp. cremoris KW2

59.172

100

0.601
  recA Streptococcus mitis NCTC 12261

61.043

97.898

0.598
  recA Streptococcus mitis SK321

61.043

97.898

0.598
  recA Pseudomonas stutzeri DSM 10701

61.043

97.898

0.598
  recA Streptococcus pyogenes NZ131

60.856

98.198

0.598
  recA Vibrio cholerae strain A1552

60.061

98.498

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.061

98.498

0.592
  recA Streptococcus mutans UA159

59.939

98.198

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

60.372

96.997

0.586
  recA Streptococcus pneumoniae D39

59.146

98.498

0.583
  recA Streptococcus pneumoniae TIGR4

59.146

98.498

0.583
  recA Streptococcus pneumoniae R6

59.146

98.498

0.583
  recA Streptococcus pneumoniae Rx1

59.146

98.498

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

97.898

0.553