Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | JFX43_RS18880 | Genome accession | NZ_CP075652 |
| Coordinates | 3891885..3892946 (+) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Escherichia coli strain STEC17-183 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3884876..3934888 | 3891885..3892946 | within | 0 |
Gene organization within MGE regions
Location: 3884876..3934888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JFX43_RS18835 (JFX43_018835) | gutQ | 3884876..3885841 (-) | 966 | WP_001287446.1 | arabinose-5-phosphate isomerase GutQ | - |
| JFX43_RS18840 (JFX43_018840) | srlR | 3885834..3886607 (-) | 774 | WP_000804546.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| JFX43_RS18845 (JFX43_018845) | gutM | 3886674..3887033 (-) | 360 | WP_000252908.1 | transcriptional regulator GutM | - |
| JFX43_RS18850 (JFX43_018850) | srlD | 3887138..3887917 (-) | 780 | WP_001077342.1 | sorbitol-6-phosphate dehydrogenase | - |
| JFX43_RS18855 (JFX43_018855) | srlB | 3887921..3888292 (-) | 372 | WP_000216201.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| JFX43_RS18860 (JFX43_018860) | srlE | 3888303..3889262 (-) | 960 | WP_000148875.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| JFX43_RS18865 (JFX43_018865) | srlA | 3889259..3889822 (-) | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| JFX43_RS18870 (JFX43_018870) | mltB | 3890078..3891163 (+) | 1086 | WP_001299653.1 | lytic murein transglycosylase B | - |
| JFX43_RS18875 (JFX43_018875) | pncC | 3891308..3891805 (+) | 498 | WP_000132235.1 | nicotinamide-nucleotide amidase | - |
| JFX43_RS18880 (JFX43_018880) | recA | 3891885..3892946 (+) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| JFX43_RS18885 (JFX43_018885) | recX | 3893189..3893689 (+) | 501 | WP_000140506.1 | recombination regulator RecX | - |
| JFX43_RS18890 (JFX43_018890) | alaS | 3893817..3896447 (+) | 2631 | WP_000047176.1 | alanine--tRNA ligase | - |
| JFX43_RS18895 (JFX43_018895) | csrA | 3896682..3896867 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| JFX43_RS18925 (JFX43_018925) | yqaB | 3898325..3898891 (+) | 567 | WP_000273309.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| JFX43_RS18930 (JFX43_018930) | yqaA | 3898888..3899316 (+) | 429 | WP_001287457.1 | YqaA family protein | - |
| JFX43_RS18935 (JFX43_018935) | gshA | 3899389..3900945 (+) | 1557 | WP_000611800.1 | glutamate--cysteine ligase | - |
| JFX43_RS18940 (JFX43_018940) | luxS | 3901095..3901610 (+) | 516 | WP_062896773.1 | S-ribosylhomocysteine lyase | - |
| JFX43_RS18945 (JFX43_018945) | emrB | 3901674..3903212 (-) | 1539 | WP_001295176.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| JFX43_RS18950 (JFX43_018950) | emrA | 3903229..3904401 (-) | 1173 | WP_001295175.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| JFX43_RS18955 (JFX43_018955) | emrR | 3904528..3905058 (-) | 531 | WP_000378442.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| JFX43_RS18960 (JFX43_018960) | ygaH | 3905149..3905484 (-) | 336 | WP_000119763.1 | L-valine transporter subunit YgaH | - |
| JFX43_RS18965 (JFX43_018965) | ygaZ | 3905474..3906211 (-) | 738 | WP_000445658.1 | L-valine exporter subunit YgaZ | - |
| JFX43_RS18970 (JFX43_018970) | - | 3906335..3907519 (-) | 1185 | WP_000165699.1 | MFS transporter | - |
| JFX43_RS18975 (JFX43_018975) | proX | 3907810..3908802 (-) | 993 | WP_001216527.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| JFX43_RS18980 (JFX43_018980) | proW | 3908860..3909924 (-) | 1065 | WP_000774996.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| JFX43_RS18985 (JFX43_018985) | proV | 3909917..3911119 (-) | 1203 | WP_000985499.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| JFX43_RS18990 (JFX43_018990) | nrdF | 3911475..3912434 (-) | 960 | WP_000777969.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| JFX43_RS18995 (JFX43_018995) | nrdE | 3912444..3914588 (-) | 2145 | WP_000246510.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| JFX43_RS19000 (JFX43_019000) | nrdI | 3914561..3914971 (-) | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| JFX43_RS19005 (JFX43_019005) | nrdH | 3914968..3915213 (-) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| JFX43_RS19010 (JFX43_019010) | ygaM | 3915461..3915790 (-) | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| JFX43_RS19015 (JFX43_019015) | ygaC | 3915942..3916286 (+) | 345 | WP_000281320.1 | DUF2002 family protein | - |
| JFX43_RS19020 (JFX43_019020) | alaE | 3916323..3916772 (-) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| JFX43_RS19025 (JFX43_019025) | stpA | 3917440..3917844 (+) | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| JFX43_RS19030 (JFX43_019030) | ygaP | 3917891..3918415 (-) | 525 | WP_032330688.1 | thiosulfate sulfurtransferase YgaP | - |
| JFX43_RS19035 (JFX43_019035) | ygaV | 3918425..3918724 (-) | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| JFX43_RS19040 (JFX43_019040) | yqaE | 3918907..3919065 (+) | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| JFX43_RS19045 (JFX43_019045) | kbp | 3919149..3919598 (+) | 450 | WP_000522424.1 | potassium binding protein Kbp | - |
| JFX43_RS19050 (JFX43_019050) | csiR | 3919599..3920261 (-) | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| JFX43_RS19055 (JFX43_019055) | gabP | 3920282..3921682 (-) | 1401 | WP_001295173.1 | GABA permease | - |
| JFX43_RS19060 (JFX43_019060) | gabT | 3921920..3923200 (-) | 1281 | WP_000097662.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| JFX43_RS19065 (JFX43_019065) | gabD | 3923214..3924662 (-) | 1449 | WP_000772820.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| JFX43_RS19070 (JFX43_019070) | lhgO | 3924685..3925953 (-) | 1269 | WP_000271986.1 | L-2-hydroxyglutarate oxidase | - |
| JFX43_RS19075 (JFX43_019075) | glaH | 3925972..3926949 (-) | 978 | WP_000993087.1 | glutarate dioxygenase GlaH | - |
| JFX43_RS19080 (JFX43_019080) | - | 3927285..3929536 (-) | 2252 | Protein_3751 | alpha-amylase family glycosyl hydrolase | - |
| JFX43_RS19090 (JFX43_019090) | - | 3930923..3932295 (+) | 1373 | Protein_3752 | DUF5507 domain-containing protein | - |
| JFX43_RS26980 (JFX43_019095) | - | 3932641..3932799 (+) | 159 | Protein_3753 | recombinase family protein | - |
| JFX43_RS19100 (JFX43_019100) | - | 3933023..3933142 (+) | 120 | WP_001120794.1 | hypothetical protein | - |
| JFX43_RS19105 (JFX43_019105) | - | 3933207..3933629 (+) | 423 | Protein_3755 | AIDA repeat-containing protein | - |
| JFX43_RS19110 (JFX43_019110) | - | 3933711..3934888 (+) | 1178 | WP_085968792.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=569975 JFX43_RS18880 WP_000963143.1 3891885..3892946(+) (recA) [Escherichia coli strain STEC17-183]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=569975 JFX43_RS18880 WP_000963143.1 3891885..3892946(+) (recA) [Escherichia coli strain STEC17-183]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTACCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGTTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTACCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGTTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.