Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KHO27_RS02295 | Genome accession | NZ_CP075595 |
| Coordinates | 499314..500390 (+) | Length | 358 a.a. |
| NCBI ID | WP_028690616.1 | Uniprot ID | A0A1H9AD33 |
| Organism | Pseudomonas sp. RC3H12 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 479333..504824 | 499314..500390 | within | 0 |
Gene organization within MGE regions
Location: 479333..504824
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KHO27_RS02170 (KHO27_02170) | - | 479333..480079 (+) | 747 | WP_082337656.1 | XRE family transcriptional regulator | - |
| KHO27_RS02175 (KHO27_02175) | - | 480541..480888 (+) | 348 | WP_110697790.1 | phage holin family protein | - |
| KHO27_RS02180 (KHO27_02180) | - | 480914..481102 (+) | 189 | WP_110697792.1 | Com family DNA-binding transcriptional regulator | - |
| KHO27_RS02185 (KHO27_02185) | - | 481112..481942 (+) | 831 | WP_110697794.1 | putidacin L1 family lectin-like bacteriocin | - |
| KHO27_RS02190 (KHO27_02190) | - | 482005..482502 (+) | 498 | WP_110697796.1 | hypothetical protein | - |
| KHO27_RS02195 (KHO27_02195) | - | 482499..483059 (+) | 561 | WP_214501112.1 | phage baseplate assembly protein V | - |
| KHO27_RS02200 (KHO27_02200) | - | 483152..483484 (+) | 333 | WP_110738424.1 | hypothetical protein | - |
| KHO27_RS02205 (KHO27_02205) | - | 483588..483914 (+) | 327 | WP_111531757.1 | GPW/gp25 family protein | - |
| KHO27_RS02210 (KHO27_02210) | - | 483911..484792 (+) | 882 | WP_111531758.1 | baseplate J/gp47 family protein | - |
| KHO27_RS02215 (KHO27_02215) | - | 484794..485405 (+) | 612 | WP_111531759.1 | phage tail protein I | - |
| KHO27_RS02220 (KHO27_02220) | - | 485398..488070 (+) | 2673 | WP_214501113.1 | phage tail protein | - |
| KHO27_RS02225 (KHO27_02225) | - | 488083..488529 (+) | 447 | WP_214501114.1 | phage tail assembly chaperone | - |
| KHO27_RS02230 (KHO27_02230) | - | 488516..489382 (+) | 867 | WP_214501115.1 | phage tail protein | - |
| KHO27_RS02235 (KHO27_02235) | - | 489524..490690 (+) | 1167 | WP_214501116.1 | phage tail sheath family protein | - |
| KHO27_RS02240 (KHO27_02240) | - | 490704..491213 (+) | 510 | WP_023628885.1 | phage major tail tube protein | - |
| KHO27_RS02245 (KHO27_02245) | - | 491226..491528 (+) | 303 | WP_046856793.1 | phage tail assembly protein | - |
| KHO27_RS02250 (KHO27_02250) | - | 491654..493933 (+) | 2280 | WP_111531764.1 | hypothetical protein | - |
| KHO27_RS02255 (KHO27_02255) | - | 493943..494788 (+) | 846 | WP_102681657.1 | phage tail protein | - |
| KHO27_RS02260 (KHO27_02260) | - | 494763..494969 (+) | 207 | WP_102681658.1 | tail protein X | - |
| KHO27_RS02265 (KHO27_02265) | - | 494986..496020 (+) | 1035 | WP_214501117.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| KHO27_RS02270 (KHO27_02270) | - | 496238..496789 (+) | 552 | WP_110697820.1 | glycoside hydrolase family 19 protein | - |
| KHO27_RS02275 (KHO27_02275) | - | 496822..497283 (+) | 462 | WP_110698198.1 | lysis system i-spanin subunit Rz | - |
| KHO27_RS02280 (KHO27_02280) | - | 497316..498062 (+) | 747 | WP_158539543.1 | colicin-like pore-forming protein | - |
| KHO27_RS02285 (KHO27_02285) | - | 498124..498696 (+) | 573 | WP_110697824.1 | hypothetical protein | - |
| KHO27_RS02290 (KHO27_02290) | - | 498727..499209 (+) | 483 | WP_110697826.1 | CinA family protein | - |
| KHO27_RS02295 (KHO27_02295) | recA | 499314..500390 (+) | 1077 | WP_028690616.1 | recombinase RecA | Machinery gene |
| KHO27_RS02300 (KHO27_02300) | recX | 500400..500870 (+) | 471 | WP_111531767.1 | recombination regulator RecX | - |
| KHO27_RS02305 (KHO27_02305) | - | 500940..502058 (-) | 1119 | WP_111531768.1 | LOG family protein | - |
| KHO27_RS02310 (KHO27_02310) | - | 502364..502570 (+) | 207 | WP_046857890.1 | hypothetical protein | - |
| KHO27_RS02315 (KHO27_02315) | - | 502572..502991 (-) | 420 | WP_110697830.1 | quorum-sensing-regulated virulence factor family protein | - |
| KHO27_RS02320 (KHO27_02320) | - | 503206..503916 (+) | 711 | WP_110697832.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| KHO27_RS02325 (KHO27_02325) | erdR | 504174..504824 (+) | 651 | WP_023631045.1 | response regulator transcription factor ErdR | - |
Sequence
Protein
Download Length: 358 a.a. Molecular weight: 37744.04 Da Isoelectric Point: 5.3078
>NTDB_id=569794 KHO27_RS02295 WP_028690616.1 499314..500390(+) (recA) [Pseudomonas sp. RC3H12]
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGSEIEK
QIRDKLLTAGAAAAAAAAAKAGAAEADADDLADADAGY
MDDNKKRALAAALGQIERQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKNGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVSPPFRQAEFQILYGKGIYRNGEIIDLGVSQGLVEKSGAWYSYQGNKIGQGKANAAKYLQENPAIGSEIEK
QIRDKLLTAGAAAAAAAAAKAGAAEADADDLADADAGY
Nucleotide
Download Length: 1077 bp
>NTDB_id=569794 KHO27_RS02295 WP_028690616.1 499314..500390(+) (recA) [Pseudomonas sp. RC3H12]
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATCCCCGCCATCTCCACCGGTTCGCTGGGCCTGGACATCGCCCTGGGCATTGGCG
GCCTGCCGAAAGGCCGTATCGTCGAGATCTACGGCCCGGAGTCTTCGGGTAAAACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAGAACGGTGCCACCTGCGCCTTCGTCGACGCCGAGCACGCCCTGGATCCTGAGTACGCCGGCAAGCTGGG
TGTCAACGTCGACGACCTGCTGGTCTCGCAGCCAGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTCGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCCGTGCGCCTGGACATTCGCCGTACCGGCGCGGTCAAGGAAGGTGATGAGGTGGTTGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAAATCATCGACCTGGGTGTTTCCCAGGGCCTGGTTGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACGCCGCCAAGTACCTGCAAGAGAACCCGGCCATTGGTAGCGAGATCGAGAAG
CAGATTCGCGACAAGCTGCTGACCGCCGGTGCCGCCGCCGCTGCAGCAGCGGCCGCCAAGGCCGGTGCCGCCGAAGCCGA
TGCCGATGATCTGGCTGACGCCGACGCCGGTTATTGA
ATGGACGACAACAAGAAGCGCGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGCCAATTCGGCAAAGGCGCGGTCATGCG
CATGGGCGACCACGAGCGCCAGGCGATCCCCGCCATCTCCACCGGTTCGCTGGGCCTGGACATCGCCCTGGGCATTGGCG
GCCTGCCGAAAGGCCGTATCGTCGAGATCTACGGCCCGGAGTCTTCGGGTAAAACCACGCTGACCCTGTCGGTCATCGCC
GAAGCCCAGAAGAACGGTGCCACCTGCGCCTTCGTCGACGCCGAGCACGCCCTGGATCCTGAGTACGCCGGCAAGCTGGG
TGTCAACGTCGACGACCTGCTGGTCTCGCAGCCAGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTCGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTCGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCCGTGCGCCTGGACATTCGCCGTACCGGCGCGGTCAAGGAAGGTGATGAGGTGGTTGGTAGCGAA
ACCCGCGTCAAGATCGTCAAGAACAAGGTCTCGCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGCGAAATCATCGACCTGGGTGTTTCCCAGGGCCTGGTTGAAAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACGCCGCCAAGTACCTGCAAGAGAACCCGGCCATTGGTAGCGAGATCGAGAAG
CAGATTCGCGACAAGCTGCTGACCGCCGGTGCCGCCGCCGCTGCAGCAGCGGCCGCCAAGGCCGGTGCCGCCGAAGCCGA
TGCCGATGATCTGGCTGACGCCGACGCCGGTTATTGA
Similar proteins
Only experimentally validated proteins are listed.