Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KIK04_RS01475 Genome accession   NZ_CP075175
Coordinates   369107..370159 (-) Length   350 a.a.
NCBI ID   WP_269670987.1    Uniprot ID   -
Organism   Paenibacillus sp. 481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 364107..375159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK04_RS01455 (KIK04_01475) - 365030..365290 (-) 261 WP_005550495.1 stage V sporulation protein S -
  KIK04_RS01460 (KIK04_01480) - 365546..366340 (-) 795 WP_232276584.1 TIGR00282 family metallophosphoesterase -
  KIK04_RS01465 (KIK04_01485) rny 366419..367960 (-) 1542 WP_232276585.1 ribonuclease Y -
  KIK04_RS01470 (KIK04_01490) - 368313..368969 (-) 657 WP_232276586.1 RecX family transcriptional regulator -
  KIK04_RS01475 (KIK04_01495) recA 369107..370159 (-) 1053 WP_269670987.1 recombinase RecA Machinery gene
  KIK04_RS01480 (KIK04_01500) - 370514..371779 (-) 1266 WP_232278547.1 competence/damage-inducible protein A -
  KIK04_RS01485 (KIK04_01505) pgsA 371917..372495 (-) 579 WP_232276587.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KIK04_RS01490 (KIK04_01510) - 372823..373314 (-) 492 WP_232278548.1 YajQ family cyclic di-GMP-binding protein -
  KIK04_RS01495 (KIK04_01515) - 373417..373581 (-) 165 WP_232276588.1 hypothetical protein -
  KIK04_RS01500 (KIK04_01520) - 373711..374676 (-) 966 WP_232276589.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37852.91 Da        Isoelectric Point: 4.9831

>NTDB_id=568286 KIK04_RS01475 WP_269670987.1 369107..370159(-) (recA) [Paenibacillus sp. 481]
MSDRRAALEMALRQIEKQFGKGSIMKLGESTHMQVEVVSSGSLALDIALGTGGLPRGRIIEIYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAISKSKTITIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRVETIKQGNDMVGNRT
RIKVVKNKVAPPFKQADIDIMYGEGISREGSIVDIATERDIIQKSGAWYSYDGERLGQGRENAKQFLKEHVAIADVIENR
IRESSNLTTTVSQDASKDDEADLAEFDSEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=568286 KIK04_RS01475 WP_269670987.1 369107..370159(-) (recA) [Paenibacillus sp. 481]
GTGTCAGATCGTCGCGCCGCATTAGAAATGGCATTGCGTCAAATTGAGAAACAGTTCGGTAAAGGTTCAATCATGAAACT
CGGCGAATCCACTCATATGCAAGTTGAGGTTGTGTCGAGCGGATCGTTAGCATTAGATATTGCACTCGGCACAGGGGGAT
TACCTCGTGGCCGAATTATTGAAATATATGGACCGGAGTCTTCTGGTAAGACAACGGTTGCTTTACATGCAATTGCGGAA
GTGCAGAAGACTGGCGGACAAGCTGCTTTCATCGATGCGGAGCATGCGTTAGACCCGGTATATGCAAGTAAACTTGGCGT
TAATATTGACGAATTGCTACTGTCACAACCAGATACAGGTGAACAAGGATTGGAAATCGCTGAAGCACTTGTACGTAGTG
GTGCGGTAGACATTGTCGTAATTGACTCCGTAGCCGCTCTCGTGCCAAAGGCAGAGATTGAAGGCGACATGGGAGATTCT
CACGTTGGTTTGCAAGCTCGTTTGATGTCGCAGGCATTGCGTAAGCTGTCTGGAGCGATTAGCAAATCGAAGACGATTAC
TATTTTTATTAACCAGTTGCGTGAGAAGGTAGGCGTTATGTTCGGTAATCCGGAGACGACTCCTGGTGGACGTGCGTTGA
AGTTCTATTCCACTGTACGTCTAGACGTTCGCCGTGTAGAGACGATTAAGCAAGGTAACGACATGGTCGGTAACCGCACG
CGTATTAAGGTTGTTAAGAATAAAGTAGCCCCTCCGTTCAAACAAGCGGATATCGATATTATGTATGGTGAAGGTATTTC
TCGTGAAGGTAGCATCGTGGATATTGCTACGGAGAGGGACATCATTCAGAAGAGTGGTGCATGGTATTCTTATGACGGTG
AACGTTTAGGTCAAGGCCGTGAGAATGCTAAGCAATTTTTGAAAGAGCATGTTGCGATTGCAGATGTTATCGAAAATAGG
ATTCGTGAAAGTAGCAACTTAACGACTACGGTATCCCAAGATGCATCTAAGGATGATGAGGCAGACTTAGCGGAATTCGA
TTCCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.957

93.429

0.766
  recA Latilactobacillus sakei subsp. sakei 23K

70.571

100

0.706
  recA Streptococcus pneumoniae D39

67.422

100

0.68
  recA Streptococcus pneumoniae Rx1

67.422

100

0.68
  recA Streptococcus pneumoniae R6

67.422

100

0.68
  recA Streptococcus pneumoniae TIGR4

67.422

100

0.68
  recA Streptococcus mitis NCTC 12261

67.806

100

0.68
  recA Streptococcus mitis SK321

66.952

100

0.671
  recA Streptococcus mutans UA159

67.723

99.143

0.671
  recA Streptococcus pyogenes NZ131

70.988

92.571

0.657
  recA Lactococcus lactis subsp. cremoris KW2

68.485

94.286

0.646
  recA Glaesserella parasuis strain SC1401

62.857

100

0.629
  recA Acinetobacter baylyi ADP1

61.318

99.714

0.611
  recA Acinetobacter baumannii D1279779

62.209

98.286

0.611
  recA Neisseria gonorrhoeae MS11

64.545

94.286

0.609
  recA Neisseria gonorrhoeae MS11

64.545

94.286

0.609
  recA Neisseria gonorrhoeae strain FA1090

64.545

94.286

0.609
  recA Vibrio cholerae strain A1552

62.17

97.429

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.17

97.429

0.606
  recA Ralstonia pseudosolanacearum GMI1000

64.634

93.714

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.29

97.429

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

93.429

0.591
  recA Pseudomonas stutzeri DSM 10701

59.71

98.571

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

91.429

0.574
  recA Helicobacter pylori 26695

61.92

92.286

0.571
  recA Helicobacter pylori strain NCTC11637

61.92

92.286

0.571