Detailed information NTG0568286

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: MK616_RS15615
• Genome accession: NZ_CP092778
• Coordinates: 3173570..3174700 (-)
• Length: 376 a.a.
• NCBI ID: WP_174532422.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WF2020
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3168570..3179700

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MK616_RS15595 (MK616_15595)	-	3168676..3169527 (-)	852	WP_100261989.1	DUF72 domain-containing protein	-
MK616_RS15600 (MK616_15600)	-	3169554..3169907 (-)	354	WP_021493983.1	YunG family protein	-
MK616_RS15605 (MK616_15605)	-	3169980..3171344 (-)	1365	WP_100261990.1	allantoinase	-
MK616_RS15610 (MK616_15610)	-	3171524..3173119 (+)	1596	WP_021493985.1	PucR family transcriptional regulator	-
MK616_RS19995	-	3173307..3173435 (-)	129	WP_014721768.1	hypothetical protein	-
MK616_RS15615 (MK616_15615)	rapC	3173570..3174700 (-)	1131	WP_174532422.1	Rap family tetratricopeptide repeat protein	Regulator
MK616_RS15620 (MK616_15620)	-	3174835..3175014 (-)	180	WP_021493988.1	hypothetical protein	-
MK616_RS15625 (MK616_15625)	-	3175139..3176272 (-)	1134	WP_094296265.1	hypothetical protein	-
MK616_RS15630 (MK616_15630)	-	3176330..3177526 (-)	1197	WP_072177417.1	MFS transporter	-
MK616_RS15635 (MK616_15635)	-	3177648..3178859 (-)	1212	WP_420868260.1	pyridoxal-phosphate-dependent aminotransferase family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44485.95 Da
• Isoelectric Point: 6.5116

>NTDB_id=568286 MK616_RS15615 WP_174532422.1 3173570..3174700(-) (rapC) [Bacillus amyloliquefaciens strain WF2020]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRLTIDE
LLEKIEASNKGISGLLFYYSLFFRGMYEFDQKQYVKAIGFYKEAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRYEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYNKAE
IYLKKATEISEKYKLGNLPHSLFTYAKLLFKQGKTTEAIQISKKGLSSAIFQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=568286 MK616_RS15615 WP_174532422.1 3173570..3174700(-) (rapC) [Bacillus amyloliquefaciens strain WF2020]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGCGTGAGACTGACAATTGACGAG
CTGCTGGAAAAAATTGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTTCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAAAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAGGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
GAACTATGTAGACTTTAAACGTTATGAAAAAAGCTTGCCGCATTTAGAGAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACTTAGAAGAATACAATAAAGCTGAA
ATCTACTTAAAAAAAGCAACGGAGATATCTGAGAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAACCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATTTCAAGGAG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAGTCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.327	100	0.447
rapF	Bacillus subtilis subsp. subtilis str. 168	40.263	100	0.407