Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   MK616_RS04015 Genome accession   NZ_CP092778
Coordinates   791955..792671 (+) Length   238 a.a.
NCBI ID   WP_012117069.1    Uniprot ID   A7Z2F7
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 786955..797671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS03985 (MK616_03985) - 787135..787512 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  MK616_RS03990 (MK616_03990) - 787522..787953 (-) 432 WP_017419105.1 Hsp20/alpha crystallin family protein -
  MK616_RS03995 (MK616_03995) - 787969..788211 (-) 243 WP_003155595.1 spore germination protein -
  MK616_RS04000 (MK616_04000) - 788226..788486 (-) 261 WP_029974062.1 spore germination protein -
  MK616_RS04005 (MK616_04005) treP 788757..790172 (+) 1416 WP_014417186.1 PTS system trehalose-specific EIIBC component -
  MK616_RS04010 (MK616_04010) treC 790248..791933 (+) 1686 WP_240680166.1 alpha,alpha-phosphotrehalase -
  MK616_RS04015 (MK616_04015) treR 791955..792671 (+) 717 WP_012117069.1 trehalose operon repressor Regulator
  MK616_RS04020 (MK616_04020) - 792804..793469 (+) 666 WP_061861964.1 NAD(P)H-dependent oxidoreductase -
  MK616_RS04025 (MK616_04025) - 793505..794266 (-) 762 WP_021493875.1 YibE/F family protein -
  MK616_RS04030 (MK616_04030) - 794263..795402 (-) 1140 WP_053285224.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27484.50 Da        Isoelectric Point: 7.3803

>NTDB_id=568191 MK616_RS04015 WP_012117069.1 791955..792671(+) (treR) [Bacillus amyloliquefaciens strain WF2020]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=568191 MK616_RS04015 WP_012117069.1 791955..792671(+) (treR) [Bacillus amyloliquefaciens strain WF2020]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGTTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACACGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z2F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424