Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BBR_RS16530 Genome accession   NC_020517
Coordinates   1475653..1476831 (-) Length   392 a.a.
NCBI ID   WP_015438912.1    Uniprot ID   -
Organism   Bifidobacterium breve UCC2003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1470653..1481831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBR_RS16520 (Bbr_1179) hpf 1473666..1474328 (-) 663 WP_015438910.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BBR_RS16525 (Bbr_1180) - 1475051..1475650 (-) 600 WP_015438911.1 regulatory protein RecX -
  BBR_RS16530 (Bbr_1181) recA 1475653..1476831 (-) 1179 WP_015438912.1 recombinase RecA Machinery gene
  BBR_RS16535 (Bbr_1182) - 1477138..1477371 (-) 234 WP_003830645.1 DUF3046 domain-containing protein -
  BBR_RS16540 (Bbr_1183) - 1477478..1477996 (-) 519 WP_080562228.1 helix-turn-helix domain-containing protein -
  BBR_RS16545 (Bbr_1184) - 1478056..1478613 (-) 558 WP_003830643.1 CinA family protein -
  BBR_RS16550 (Bbr_1185) pgsA 1478714..1479349 (-) 636 WP_015438915.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 41404.07 Da        Isoelectric Point: 5.5746

>NTDB_id=56735 BBR_RS16530 WP_015438912.1 1475653..1476831(-) (recA) [Bifidobacterium breve UCC2003]
MALETKPAQDPATETKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPVQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDEDAAAAAAVSEAAAADAAKDTKATAAPAAKSSRAKA

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=56735 BBR_RS16530 WP_015438912.1 1475653..1476831(-) (recA) [Bifidobacterium breve UCC2003]
ATGGCACTTGAGACCAAGCCGGCCCAAGATCCGGCAACCGAGACCAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACTGCTTTGGCGCAGGTCGAAAAAAGCTTCGGCAAGGGCTCGGCCATGCGCCTCGGCGATCAGCCCGTGCAAAATG
TCGAAGTAATCCCTACCGGTTCGCTCGCGCTCGACATGGCGTTGGGCATTGGCGGCCTGCCGAAGGGCCGCATCGTGGAA
ATCTATGGTCCCGAATCGTCCGGTAAAACCACGCTTGCCCTGCATGTGGTGGCCAATGCCCAGAAGAAGGGTGGCGTGGC
CGCATACATTGACGCCGAGCACGCGCTCGATCCGGCCTATGCTCGCAAACTTGGCGTGGACACTGATTCGCTTATCGTTT
CTCAGCCGGACAACGGCGAACAGGCTCTTGAGATTGCAGACATGCTGATTCGTTCTGGCGCGCTTGATGTCATCGTTATC
GATTCGGTGGCGGCTCTGGTGCCAAAGGCCGAGATCGAAGGCGAGATGGGAGACAGCCACGTCGGTTTGCAGGCCCGACT
CATGAGCCAGGCTCTGCGCAAGATGACCGGTGCCTTGGCCCAAGCAGGTACCACCGCCATCTTCATCAACCAGCTACGCG
AAAAGATCGGCGTGTTCTTCGGTAATCCCGAAACCACTACCGGTGGCAAGGCTCTGAAGTTCTATGCCTCTGTGCGTCTT
GACATTCGCCGTATCCAGACCTTGAAGAACGGTGATGAAGCGGTGGGCAACCGTACTCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCCTTCAAGTCCGCCGAATTCGACATGCTTTACGGCGAAGGTATCTCCCGCGAAGGTTCGGTCATCGACA
TGGCCCAACAGGTCGGCGTGGTCAAGAAGTCCGGCTCGTGGTTCACCTATGAGGGCGACCAGCTTGGTCAGGGTCGAGAG
AAGGTTCGTCAGTTCCTCAAGGACAACCCGGCCATCACCGAAGAGATTGAAAACAAGGTCAAGGCAGAATTTGGTTTGAT
CGGTTCCGCCGATCAGTTTGCCGAAGACGAAGACGCTGCTGCAGCTGCCGCAGTCAGCGAGGCCGCTGCGGCCGATGCCG
CCAAGGACACCAAGGCCACTGCAGCGCCTGCCGCCAAGTCGTCTCGCGCCAAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

63.743

87.245

0.556
  recA Pseudomonas stutzeri DSM 10701

65.465

84.949

0.556
  recA Acinetobacter baylyi ADP1

64.583

85.714

0.554
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

86.224

0.548
  recA Streptococcus mitis NCTC 12261

57.808

93.112

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.471

86.735

0.533
  recA Ralstonia pseudosolanacearum GMI1000

66.773

79.847

0.533
  recA Bacillus subtilis subsp. subtilis str. 168

64.506

82.653

0.533
  recA Streptococcus mitis SK321

56.948

93.622

0.533
  recA Neisseria gonorrhoeae strain FA1090

63.804

83.163

0.531
  recA Neisseria gonorrhoeae MS11

63.804

83.163

0.531
  recA Neisseria gonorrhoeae MS11

63.804

83.163

0.531
  recA Glaesserella parasuis strain SC1401

61.538

86.224

0.531
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.777

82.398

0.526
  recA Vibrio cholerae strain A1552

63.777

82.398

0.526
  recA Streptococcus mutans UA159

60.355

86.224

0.52
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

82.908

0.515
  recA Lactococcus lactis subsp. cremoris KW2

61.212

84.184

0.515
  recA Streptococcus pneumoniae D39

59.763

86.224

0.515
  recA Streptococcus pneumoniae TIGR4

59.763

86.224

0.515
  recA Streptococcus pneumoniae Rx1

59.763

86.224

0.515
  recA Streptococcus pneumoniae R6

59.763

86.224

0.515
  recA Streptococcus pyogenes NZ131

59.821

85.714

0.513
  recA Helicobacter pylori strain NCTC11637

60.976

83.673

0.51
  recA Helicobacter pylori 26695

60.976

83.673

0.51
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.05

85.969

0.508

Multiple sequence alignment