Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SAFDA_RS08095 Genome accession   NZ_AP014942
Coordinates   1651315..1652589 (+) Length   424 a.a.
NCBI ID   WP_000102740.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1646315..1657589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS08065 (SAFDA_1517) mnmA 1646529..1647647 (-) 1119 WP_000066094.1 tRNA 2-thiouridine(34) synthase MnmA -
  SAFDA_RS08070 (SAFDA_1518) - 1647648..1648790 (-) 1143 WP_000409158.1 cysteine desulfurase family protein -
  SAFDA_RS08075 (SAFDA_1519) - 1649102..1650115 (+) 1014 WP_000985895.1 LLM class flavin-dependent oxidoreductase -
  SAFDA_RS08080 (SAFDA_1520) - 1650352..1650498 (-) 147 WP_000009238.1 SAS049 family protein -
  SAFDA_RS08085 (SAFDA_1521) - 1650538..1650720 (-) 183 WP_000752909.1 CsbD family protein -
  SAFDA_RS08090 (SAFDA_1522) cymR 1650820..1651230 (-) 411 WP_060829068.1 cysteine metabolism transcriptional regulator CymR -
  SAFDA_RS08095 (SAFDA_1523) rarA 1651315..1652589 (+) 1275 WP_000102740.1 replication-associated recombination protein A Machinery gene
  SAFDA_RS08100 (SAFDA_1524) - 1652750..1653523 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  SAFDA_RS08105 - 1653523..1653651 (-) 129 WP_001790559.1 hypothetical protein -
  SAFDA_RS08115 (SAFDA_1525) aspS 1653984..1655750 (-) 1767 WP_042727696.1 aspartate--tRNA ligase -
  SAFDA_RS08120 (SAFDA_1526) hisS 1655766..1657028 (-) 1263 WP_000590824.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47264.84 Da        Isoelectric Point: 8.3539

>NTDB_id=56735 SAFDA_RS08095 WP_000102740.1 1651315..1652589(+) (rarA) [Staphylococcus aureus strain FDA209P]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=56735 SAFDA_RS08095 WP_000102740.1 1651315..1652589(+) (rarA) [Staphylococcus aureus strain FDA209P]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment