Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KHX94_RS15795 Genome accession   NZ_CP074572
Coordinates   3282432..3283502 (+) Length   356 a.a.
NCBI ID   WP_213681356.1    Uniprot ID   -
Organism   Shewanella dokdonensis strain DSM 23626     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3277432..3288502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHX94_RS15780 (KHX94_15775) - 3277553..3278452 (+) 900 WP_213683480.1 peptidoglycan DD-metalloendopeptidase family protein -
  KHX94_RS15785 (KHX94_15780) rpoS 3278529..3279476 (+) 948 WP_213681355.1 RNA polymerase sigma factor RpoS -
  KHX94_RS15790 (KHX94_15785) mutS 3279545..3282133 (-) 2589 WP_213683481.1 DNA mismatch repair protein MutS -
  KHX94_RS15795 (KHX94_15790) recA 3282432..3283502 (+) 1071 WP_213681356.1 recombinase RecA Machinery gene
  KHX94_RS15800 (KHX94_15795) - 3283514..3283948 (+) 435 WP_342345773.1 regulatory protein RecX -
  KHX94_RS15805 (KHX94_15800) alaS 3284305..3286925 (+) 2621 Protein_3168 alanine--tRNA ligase -
  KHX94_RS15810 (KHX94_15805) - 3286948..3288159 (+) 1212 WP_213681357.1 aspartate kinase -
  KHX94_RS15815 (KHX94_15810) csrA 3288273..3288470 (+) 198 WP_133039664.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38093.64 Da        Isoelectric Point: 5.1702

>NTDB_id=565359 KHX94_RS15795 WP_213681356.1 3282432..3283502(+) (recA) [Shewanella dokdonensis strain DSM 23626]
MKIDPNKEKALNAVLGQIEKQFGKGSIMKLGEDRSMDVATISTGSLSLDIALGAGGLPLGRIVEIYGPESSGKTTLTLEV
IAAAQREGKVCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVG
NETRVKVVKNKVAAPFKQADFQILYGKGINRVGELVDLGVAHKLIEKSGAWYSYKGDKIGQGRANAGKFLQDNPEIAQEI
DTQLREMLLHKGGIGATAASETSGEDNIDMETGEIF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=565359 KHX94_RS15795 WP_213681356.1 3282432..3283502(+) (recA) [Shewanella dokdonensis strain DSM 23626]
ATGAAGATTGATCCGAACAAAGAGAAAGCGTTAAACGCCGTGCTGGGCCAGATTGAAAAACAATTTGGTAAGGGCTCGAT
TATGAAATTGGGTGAAGACAGAAGCATGGATGTGGCAACAATTTCCACTGGTTCGCTTTCTCTGGATATCGCATTAGGTG
CAGGTGGTTTACCACTTGGACGTATCGTCGAAATCTACGGACCTGAATCTTCAGGTAAAACCACGCTTACACTAGAAGTG
ATCGCCGCTGCTCAGCGCGAAGGTAAGGTGTGCGCCTTTATTGATGCCGAGCATGCGCTGGATCCAATCTACGCCCGTAA
ATTAGGTGTCGATATTGATAATCTGCTGTGTTCTCAGCCCGATACTGGTGAACAAGCCTTAGAAATCTGTGATGCGTTGA
CACGCAGTGGTGCTGTGGATGTCATTATTGTGGATTCAGTTGCCGCATTGACACCCAAGGCTGAGATTGAAGGTGAAATC
GGCGATTCTCACATGGGCTTGGCCGCACGTATGATGAGCCAGGCGATGCGTAAGCTTGCCGGTAACCTCAAACAATCCAA
CACCTTGCTGATCTTTATCAACCAGATCCGTATGAAAATCGGGGTAATGTTCGGTAACCCAGAAACCACGACTGGTGGTA
ATGCGCTGAAATTCTATGCCTCTGTACGTCTGGATATTCGTCGTACTGGTTCTATTAAGGAAGGCGATGAAGTTGTGGGT
AACGAGACCCGCGTTAAGGTGGTTAAGAACAAAGTTGCCGCACCTTTTAAACAGGCTGATTTTCAAATTCTTTATGGTAA
AGGCATTAACCGTGTCGGTGAATTAGTCGATCTGGGTGTTGCTCATAAGCTCATCGAAAAATCAGGTGCTTGGTACAGTT
ATAAAGGCGATAAAATCGGTCAGGGTCGCGCCAATGCCGGTAAATTCCTGCAAGATAACCCTGAAATCGCTCAAGAGATT
GATACCCAGTTGCGTGAAATGTTGCTACACAAAGGTGGCATTGGTGCCACGGCTGCTAGCGAAACCTCCGGTGAAGATAA
TATCGATATGGAAACTGGAGAAATCTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

79.942

96.629

0.772
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.942

96.629

0.772
  recA Pseudomonas stutzeri DSM 10701

75.841

91.854

0.697
  recA Acinetobacter baylyi ADP1

69.075

97.191

0.671
  recA Acinetobacter baumannii D1279779

70.958

93.82

0.666
  recA Glaesserella parasuis strain SC1401

67.143

98.315

0.66
  recA Neisseria gonorrhoeae MS11

67.155

95.787

0.643
  recA Neisseria gonorrhoeae MS11

67.155

95.787

0.643
  recA Neisseria gonorrhoeae strain FA1090

67.155

95.787

0.643
  recA Ralstonia pseudosolanacearum GMI1000

71.704

87.36

0.626
  recA Streptococcus pneumoniae R6

60.511

98.876

0.598
  recA Streptococcus pneumoniae Rx1

60.511

98.876

0.598
  recA Streptococcus pneumoniae D39

60.511

98.876

0.598
  recA Streptococcus pneumoniae TIGR4

60.511

98.876

0.598
  recA Streptococcus mitis NCTC 12261

63.415

92.135

0.584
  recA Streptococcus mitis SK321

63.11

92.135

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60

95.506

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.534

94.663

0.573
  recA Streptococcus mutans UA159

61.89

92.135

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.169

0.565
  recA Streptococcus pyogenes NZ131

60.976

92.135

0.562
  recA Helicobacter pylori 26695

60.245

91.854

0.553
  recA Helicobacter pylori strain NCTC11637

59.939

91.854

0.551
  recA Lactococcus lactis subsp. cremoris KW2

59.146

92.135

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

60.502

89.607

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.635

88.483

0.537