Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KHQ31_RS05210 Genome accession   NZ_CP074441
Coordinates   996361..997509 (-) Length   382 a.a.
NCBI ID   WP_213408509.1    Uniprot ID   -
Organism   Weissella ceti strain CECT 7719     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 991361..1002509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHQ31_RS05195 (KHQ31_05195) - 991829..992599 (-) 771 WP_213408503.1 peptidoglycan-binding protein -
  KHQ31_RS05200 (KHQ31_05200) coaA 992989..993936 (-) 948 WP_213408505.1 type I pantothenate kinase -
  KHQ31_RS05205 (KHQ31_05205) helD 993939..996224 (-) 2286 WP_213408507.1 RNA polymerase recycling motor HelD -
  KHQ31_RS05210 (KHQ31_05210) recA 996361..997509 (-) 1149 WP_213408509.1 recombinase RecA Machinery gene
  KHQ31_RS05215 (KHQ31_05215) - 997584..998060 (-) 477 WP_213408511.1 CinA family protein -
  KHQ31_RS05220 (KHQ31_05220) pgsA 998129..998713 (-) 585 WP_213408513.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KHQ31_RS05225 (KHQ31_05225) - 998729..999628 (-) 900 WP_213408515.1 RodZ domain-containing protein -
  KHQ31_RS05230 (KHQ31_05230) yfmH 999699..1000970 (-) 1272 WP_213408517.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KHQ31_RS05235 (KHQ31_05235) yfmF 1000948..1002225 (-) 1278 WP_213408519.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 41098.59 Da        Isoelectric Point: 4.7726

>NTDB_id=564937 KHQ31_RS05210 WP_213408509.1 996361..997509(-) (recA) [Weissella ceti strain CECT 7719]
MASGKNINPNKKIEGRIEDKAAREKALNDALKKIEKSFGKGSVMKMGDSKFTHVESTSTGSLKLDIALGIGGYPKGRIIE
IYGPESSGKTTLALHAVAEAQKNGGIVAYIDAENAIDVAYARALGVNVDELLLSQPDTGEQGLAIADELISSGAIDMVVV
DSVAALTPKAEIDGEIGDSSVGLQARMMSQALRKMSGGILRTGTTAIFINQLREKIGVMFGNPETTPGGRALKFYSSVRL
DVRRRGSIEPTKADGDDVKSVGNLTKIKVAKNKVAAPFREIEIEIMFGKGISKTGEMIDLAVDKDIVNKSGSWFAYEGNK
IGQGKVNAIRWLEDPEQQATYDEIYNRVRDAYLGNKEEIVEEVDAVEANENVESLDLLDDGE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=564937 KHQ31_RS05210 WP_213408509.1 996361..997509(-) (recA) [Weissella ceti strain CECT 7719]
ATGGCATCAGGGAAGAATATTAATCCGAATAAAAAGATTGAAGGACGTATTGAAGATAAAGCGGCTCGTGAAAAGGCCTT
AAATGATGCGTTGAAGAAGATTGAAAAATCATTTGGTAAGGGATCAGTTATGAAGATGGGTGACAGTAAGTTCACGCATG
TTGAATCAACATCAACTGGTTCATTGAAGTTGGATATCGCCTTGGGAATTGGTGGATATCCTAAGGGTCGTATTATTGAA
ATTTATGGACCTGAATCATCAGGTAAGACAACACTGGCTTTGCACGCTGTTGCGGAAGCGCAAAAAAATGGCGGAATTGT
CGCATATATTGATGCGGAAAACGCGATTGACGTTGCTTATGCTCGTGCATTAGGTGTTAATGTTGATGAATTGTTATTGT
CACAACCAGATACTGGTGAACAAGGACTTGCAATCGCGGATGAATTGATTTCATCTGGTGCGATTGACATGGTTGTTGTC
GACTCAGTTGCGGCGTTGACACCAAAGGCTGAAATTGACGGTGAAATTGGAGATTCTTCAGTTGGGCTACAAGCACGTAT
GATGTCACAAGCATTGCGTAAGATGTCTGGTGGTATTTTACGTACTGGAACAACTGCAATTTTCATTAACCAATTGCGTG
AAAAGATTGGGGTTATGTTTGGTAACCCTGAAACAACACCAGGTGGACGTGCATTGAAGTTTTATTCTTCTGTACGTTTG
GATGTGCGTCGTCGTGGAAGCATCGAACCGACTAAGGCAGATGGAGATGATGTGAAGTCAGTTGGTAACTTGACTAAGAT
TAAGGTTGCTAAGAACAAGGTTGCTGCACCTTTCCGTGAAATTGAAATCGAAATTATGTTCGGTAAGGGAATTTCAAAGA
CTGGTGAAATGATTGACTTGGCGGTTGATAAGGATATCGTCAATAAGTCAGGATCATGGTTTGCTTATGAAGGTAACAAG
ATTGGTCAAGGAAAGGTTAATGCAATTCGTTGGCTAGAAGATCCTGAACAACAAGCAACTTATGATGAAATTTACAACCG
TGTTCGTGATGCTTACTTGGGAAACAAGGAAGAAATTGTTGAAGAGGTTGATGCTGTTGAGGCAAATGAAAACGTAGAAT
CATTGGATTTGTTGGACGACGGTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

65.229

97.12

0.634
  recA Streptococcus mitis SK321

64.151

97.12

0.623
  recA Streptococcus pneumoniae R6

66.957

90.314

0.605
  recA Streptococcus pneumoniae Rx1

66.957

90.314

0.605
  recA Streptococcus pneumoniae D39

66.957

90.314

0.605
  recA Streptococcus pneumoniae TIGR4

66.957

90.314

0.605
  recA Streptococcus mutans UA159

61.662

97.644

0.602
  recA Streptococcus pyogenes NZ131

66.087

90.314

0.597
  recA Lactococcus lactis subsp. cremoris KW2

67.169

86.911

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

65.766

87.173

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.636

86.387

0.55
  recA Glaesserella parasuis strain SC1401

54.933

98.168

0.539
  recA Vibrio cholerae strain A1552

58.239

92.147

0.537
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.239

92.147

0.537
  recA Ralstonia pseudosolanacearum GMI1000

60

89.005

0.534
  recA Acinetobacter baumannii D1279779

61.631

86.649

0.534
  recA Acinetobacter baylyi ADP1

61.329

86.649

0.531
  recA Neisseria gonorrhoeae strain FA1090

63.636

83.508

0.531
  recA Neisseria gonorrhoeae MS11

63.636

83.508

0.531
  recA Neisseria gonorrhoeae MS11

63.636

83.508

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.18

87.435

0.526
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.98

91.885

0.524
  recA Helicobacter pylori 26695

58.407

88.743

0.518
  recA Helicobacter pylori strain NCTC11637

57.817

88.743

0.513
  recA Pseudomonas stutzeri DSM 10701

62.222

82.461

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.495

86.649

0.49