Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KG086_RS11955 Genome accession   NZ_CP074378
Coordinates   2510113..2511306 (-) Length   397 a.a.
NCBI ID   WP_129301457.1    Uniprot ID   A0A4Q1U5Y1
Organism   Lacticaseibacillus chiayiensis strain FBL7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2505113..2516306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG086_RS11935 (KG086_11935) - 2506085..2506897 (-) 813 WP_129301461.1 Cof-type HAD-IIB family hydrolase -
  KG086_RS11940 (KG086_11940) - 2506993..2507475 (+) 483 WP_129301460.1 ribonuclease H family protein -
  KG086_RS11945 (KG086_11945) - 2507481..2508383 (-) 903 WP_129301459.1 LysR family transcriptional regulator -
  KG086_RS11950 (KG086_11950) - 2508648..2509853 (+) 1206 WP_129301458.1 PLP-dependent aminotransferase family protein -
  KG086_RS11955 (KG086_11955) recA 2510113..2511306 (-) 1194 WP_129301457.1 recombinase RecA Machinery gene
  KG086_RS11960 (KG086_11960) - 2512050..2512748 (+) 699 WP_129301455.1 DUF554 domain-containing protein -
  KG086_RS11965 (KG086_11965) - 2513097..2513570 (-) 474 WP_129301454.1 DUF7679 family protein -
  KG086_RS11975 (KG086_11975) - 2514310..2516295 (-) 1986 WP_129301453.1 fructose-specific PTS transporter subunit EIIC -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43170.06 Da        Isoelectric Point: 5.6139

>NTDB_id=564479 KG086_RS11955 WP_129301457.1 2510113..2511306(-) (recA) [Lacticaseibacillus chiayiensis strain FBL7]
MAKKTTTKNDNTKSDATDRETELEKALQKIKKAFGEGAVMKMGDRPELKIDVVSTGILSLDLALGVGGLPRGRIVEIYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGIVFGNPEVTPGGRALKFYASVRIEVKR
GQQVKDGKNVIGFASKLKVTKNKVAPPFKTVDTTMSFGHGIEHNTDMINLVTEKDSKFDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPELSKEIEAKIREQAAPKKPEETDDDKKDAKKDEKATAETKTEKTDEIEKKQDDKKDDPSSFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=564479 KG086_RS11955 WP_129301457.1 2510113..2511306(-) (recA) [Lacticaseibacillus chiayiensis strain FBL7]
ATGGCGAAAAAAACGACCACAAAGAATGATAATACAAAGTCTGATGCCACAGATCGCGAAACTGAATTAGAAAAAGCCCT
GCAAAAAATCAAAAAGGCGTTCGGTGAAGGCGCTGTTATGAAAATGGGCGATCGGCCGGAACTGAAGATTGATGTTGTGT
CAACCGGCATTTTGTCGCTGGATTTGGCACTTGGTGTCGGCGGATTGCCGCGCGGTCGAATTGTGGAGATTTACGGCCCT
GAAAGTACCGGGAAAACCACGATTGCCTTGCAGACGATTGCGGAGTTGCAGAAGTCCGGTGGTAAGGCAGCTTATATTGA
TGCCGAAAATGCGATGGATCCAAAGTATGCGGCCGAACTTGGGGTCAACATCGATGATCTCTTGCTGTCCCAGCCAAACT
CCGGCGAACAAGGGTTGGAGATTGCTGAAATGCTGATTGAATCTGCAGCCGTGGATATTGTCGTGATTGATTCCGTTGCC
GCTTTGGTTCCAAAAGCTGAAATTGAAGGCGCCATTGGTGACAGTCATGTCGGCTTGCAAGCGCGGCTGATGTCGCAAGC
ACTACGGAAAATGGCCGGATCGATTAACAACACCAATACACTGGTTATCTTTATCAATCAGTTGCGCGAAAAAGTCGGTA
TCGTGTTTGGTAACCCAGAAGTCACTCCGGGCGGACGCGCCTTGAAGTTTTATGCTTCAGTGCGAATCGAAGTTAAACGA
GGCCAACAAGTCAAAGACGGTAAAAATGTTATCGGCTTTGCCAGCAAGCTGAAAGTTACCAAAAACAAGGTGGCACCACC
ATTTAAGACCGTCGATACCACCATGTCATTTGGCCATGGCATTGAACACAATACGGACATGATTAATCTGGTAACAGAAA
AAGACAGTAAATTTGACGTCATTACGAAATCAGGTTCGTGGTATAACTACGGCAAAGAGCGGTTAGGCCAGGGCCTTGTC
AATGCTTCCCATTATCTGGACGAACATCCGGAATTATCCAAAGAAATCGAAGCCAAAATCCGCGAACAGGCAGCGCCTAA
GAAGCCTGAAGAAACAGATGATGACAAGAAAGACGCCAAGAAAGACGAGAAAGCAACTGCCGAGACTAAAACAGAAAAGA
CGGATGAAATAGAGAAAAAGCAGGATGACAAGAAAGACGATCCATCAAGCTTTGGTGTTGACCGTTTAGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q1U5Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae R6

55.039

97.481

0.537
  recA Streptococcus pneumoniae TIGR4

55.039

97.481

0.537
  recA Streptococcus pneumoniae Rx1

55.039

97.481

0.537
  recA Streptococcus pneumoniae D39

55.039

97.481

0.537
  recA Streptococcus mitis NCTC 12261

55.091

96.474

0.531
  recA Streptococcus mutans UA159

54.688

96.725

0.529
  recA Streptococcus pyogenes NZ131

56.911

92.947

0.529
  recA Streptococcus mitis SK321

56.906

91.184

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

62.037

81.612

0.506
  recA Lactococcus lactis subsp. cremoris KW2

58.309

86.398

0.504
  recA Bacillus subtilis subsp. subtilis str. 168

60.55

82.368

0.499
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.39

89.169

0.476
  recA Glaesserella parasuis strain SC1401

53.736

87.657

0.471
  recA Acinetobacter baylyi ADP1

54.227

86.398

0.469
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.734

85.139

0.466
  recA Pseudomonas stutzeri DSM 10701

56.79

81.612

0.463
  recA Ralstonia pseudosolanacearum GMI1000

58.28

79.093

0.461
  recA Neisseria gonorrhoeae strain FA1090

57.325

79.093

0.453
  recA Neisseria gonorrhoeae MS11

57.325

79.093

0.453
  recA Neisseria gonorrhoeae MS11

57.325

79.093

0.453
  recA Acinetobacter baumannii D1279779

55.14

80.856

0.446
  recA Helicobacter pylori strain NCTC11637

52.761

82.116

0.433
  recA Helicobacter pylori 26695

52.761

82.116

0.433
  recA Vibrio cholerae O1 biovar El Tor strain E7946

52.615

81.864

0.431
  recA Vibrio cholerae strain A1552

52.615

81.864

0.431
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.615

81.864

0.431