Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KGS74_RS10970 Genome accession   NZ_CP074377
Coordinates   2341028..2342221 (+) Length   397 a.a.
NCBI ID   WP_049169629.1    Uniprot ID   -
Organism   Lacticaseibacillus casei strain FBL6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2336028..2347221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS74_RS10955 (KGS74_10955) - 2336625..2338610 (+) 1986 WP_049169349.1 fructose-specific PTS transporter subunit EIIC -
  KGS74_RS10960 (KGS74_10960) - 2339216..2339689 (+) 474 WP_049169633.1 hypothetical protein -
  KGS74_RS10965 (KGS74_10965) - 2339766..2340464 (-) 699 WP_049169631.1 DUF554 domain-containing protein -
  KGS74_RS10970 (KGS74_10970) recA 2341028..2342221 (+) 1194 WP_049169629.1 recombinase RecA Machinery gene
  KGS74_RS10975 (KGS74_10975) - 2342491..2343696 (-) 1206 WP_049169627.1 PLP-dependent aminotransferase family protein -
  KGS74_RS10980 (KGS74_10980) - 2343964..2344866 (+) 903 WP_010490878.1 LysR family transcriptional regulator -
  KGS74_RS10985 (KGS74_10985) - 2344872..2345354 (-) 483 WP_049169625.1 ribonuclease H -
  KGS74_RS10990 (KGS74_10990) - 2345450..2346262 (+) 813 WP_049169623.1 Cof-type HAD-IIB family hydrolase -
  KGS74_RS10995 (KGS74_10995) - 2346424..2347125 (+) 702 WP_049169622.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43117.95 Da        Isoelectric Point: 5.2898

>NTDB_id=564446 KGS74_RS10970 WP_049169629.1 2341028..2342221(+) (recA) [Lacticaseibacillus casei strain FBL6]
MAKKTTTKNANTKSDTTDRETELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEIYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKK
GQQVKDGKDVIGFASKLKVTKNKVAPPFKTVETTMSFGHGIEHNTDMINLVTEKDSKFDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEAKIREQAAPKKPEETDDDKKDAKKDVKSTDEDKTEKPAETDEKQDDKKDDPSSFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=564446 KGS74_RS10970 WP_049169629.1 2341028..2342221(+) (recA) [Lacticaseibacillus casei strain FBL6]
ATGGCGAAGAAAACGACCACAAAGAATGCGAATACAAAATCTGATACCACAGATCGCGAAACCGAATTAGAAAAGGCGCT
GCAGAAAATCAAGAAGGCGTTTGGTGAAGGCGCCGTGATGAAGATGGGTGATCGGCCGGAACTGAAGGTTGATGTTGTTT
CGACCGGCATTCTTTCACTGGACTTGGCGCTTGGTGTCGGCGGGTTGCCACGCGGCCGGATTGTGGAAATCTATGGTCCT
GAAAGTACCGGGAAAACCACAATTGCGTTACAGACGATCGCAGAGTTGCAAAAGTCCGGCGGCAAGGCAGCTTATATTGA
TGCCGAAAACGCGATGGATCCAAAATATGCGGCTGAACTTGGGGTCAACATTGATGATCTTCTGTTATCCCAGCCAAACT
CGGGCGAACAGGGATTGGAAATTGCCGAAATGCTGATCGAATCTGCCGCCGTGGATATTGTCGTGATTGACTCCGTTGCC
GCTTTGGTTCCCAAGGCTGAAATCGAAGGCGCCATTGGTGACAGTCATGTCGGCTTACAAGCGCGGTTAATGTCGCAAGC
GCTGCGTAAAATGGCTGGATCGATCAACAATACCAATACATTGGTGATCTTTATCAATCAGTTGCGGGAAAAAGTCGGCG
TGATGTTTGGCAATCCGGAAGTTACGCCGGGCGGACGCGCTTTGAAGTTCTATGCCTCGGTTCGTATTGAGGTTAAAAAA
GGCCAGCAAGTCAAGGATGGCAAAGATGTGATCGGTTTTGCCAGCAAGCTGAAGGTTACCAAGAACAAGGTGGCGCCACC
ATTTAAGACGGTTGAAACAACGATGTCATTTGGTCATGGGATTGAGCACAACACCGACATGATCAACTTAGTGACGGAAA
AAGACAGTAAATTTGACGTCATTACGAAATCAGGATCCTGGTACAACTATGGCAAAGAGCGTTTGGGCCAAGGGCTCGTG
AACGCCTCCCATTATCTTGATGAACATCCGGAAATTTCTAAGGAAATCGAAGCCAAAATCCGTGAACAGGCTGCACCTAA
GAAGCCTGAAGAAACGGACGACGACAAGAAGGACGCTAAAAAAGACGTCAAGTCAACCGACGAAGACAAGACTGAAAAGC
CAGCTGAGACCGATGAAAAGCAGGATGACAAGAAAGACGATCCATCAAGCTTTGGCGTTGACCGGTTAGTTTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

57.333

94.458

0.542
  recA Streptococcus pyogenes NZ131

57.995

92.947

0.539
  recA Streptococcus mitis SK321

57.067

94.458

0.539
  recA Streptococcus mutans UA159

55.181

97.229

0.537
  recA Streptococcus pneumoniae R6

57.65

92.191

0.531
  recA Streptococcus pneumoniae Rx1

57.65

92.191

0.531
  recA Streptococcus pneumoniae D39

57.65

92.191

0.531
  recA Streptococcus pneumoniae TIGR4

57.65

92.191

0.531
  recA Latilactobacillus sakei subsp. sakei 23K

63.272

81.612

0.516
  recA Lactococcus lactis subsp. cremoris KW2

58.892

86.398

0.509
  recA Bacillus subtilis subsp. subtilis str. 168

61.468

82.368

0.506
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.213

85.139

0.479
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.258

88.917

0.474
  recA Glaesserella parasuis strain SC1401

54.651

86.65

0.474
  recA Pseudomonas stutzeri DSM 10701

57.407

81.612

0.469
  recA Acinetobacter baylyi ADP1

55.224

84.383

0.466
  recA Ralstonia pseudosolanacearum GMI1000

58.599

79.093

0.463
  recA Neisseria gonorrhoeae MS11

58.28

79.093

0.461
  recA Neisseria gonorrhoeae strain FA1090

58.28

79.093

0.461
  recA Neisseria gonorrhoeae MS11

58.28

79.093

0.461
  recA Acinetobacter baumannii D1279779

55.215

82.116

0.453
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.538

81.864

0.438
  recA Vibrio cholerae strain A1552

53.538

81.864

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.538

81.864

0.438
  recA Helicobacter pylori strain NCTC11637

52.454

82.116

0.431
  recA Helicobacter pylori 26695

52.454

82.116

0.431