Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KFU91_RS05360 | Genome accession | NZ_CP073929 |
| Coordinates | 1115559..1116620 (+) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Escherichia coli strain MB64 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1108550..1146846 | 1115559..1116620 | within | 0 |
Gene organization within MGE regions
Location: 1108550..1146846
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU91_RS05315 (KFU91_05265) | gutQ | 1108550..1109515 (-) | 966 | WP_001287420.1 | arabinose-5-phosphate isomerase GutQ | - |
| KFU91_RS05320 (KFU91_05270) | srlR | 1109508..1110281 (-) | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| KFU91_RS05325 (KFU91_05275) | gutM | 1110348..1110707 (-) | 360 | WP_000252908.1 | transcriptional regulator GutM | - |
| KFU91_RS05330 (KFU91_05280) | srlD | 1110812..1111591 (-) | 780 | WP_001077358.1 | sorbitol-6-phosphate dehydrogenase | - |
| KFU91_RS05335 (KFU91_05285) | srlB | 1111595..1111966 (-) | 372 | WP_000216194.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| KFU91_RS05340 (KFU91_05290) | srlE | 1111977..1112936 (-) | 960 | WP_000148878.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| KFU91_RS05345 (KFU91_05295) | srlA | 1112933..1113496 (-) | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| KFU91_RS05350 (KFU91_05300) | mltB | 1113752..1114837 (+) | 1086 | WP_001295177.1 | lytic murein transglycosylase B | - |
| KFU91_RS05355 (KFU91_05305) | pncC | 1114982..1115479 (+) | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| KFU91_RS05360 (KFU91_05310) | recA | 1115559..1116620 (+) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| KFU91_RS05365 (KFU91_05315) | recX | 1116689..1117189 (+) | 501 | WP_000140508.1 | recombination regulator RecX | - |
| KFU91_RS05370 (KFU91_05320) | alaS | 1117317..1119947 (+) | 2631 | WP_257198954.1 | alanine--tRNA ligase | - |
| KFU91_RS05375 (KFU91_05325) | csrA | 1120182..1120367 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| KFU91_RS05405 (KFU91_05355) | yqaB | 1121960..1122526 (+) | 567 | WP_000273290.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| KFU91_RS05410 (KFU91_05360) | yqaA | 1122523..1122951 (+) | 429 | WP_001287454.1 | YqaA family protein | - |
| KFU91_RS05415 (KFU91_05365) | gshA | 1123024..1124580 (+) | 1557 | WP_000611804.1 | glutamate--cysteine ligase | - |
| KFU91_RS05420 (KFU91_05370) | luxS | 1124730..1125245 (+) | 516 | WP_001130211.1 | S-ribosylhomocysteine lyase | - |
| KFU91_RS05425 (KFU91_05375) | emrB | 1125309..1126847 (-) | 1539 | WP_001295176.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| KFU91_RS05430 (KFU91_05380) | emrA | 1126864..1128036 (-) | 1173 | WP_001295175.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| KFU91_RS05435 (KFU91_05385) | emrR | 1128163..1128693 (-) | 531 | WP_000378442.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| KFU91_RS05440 (KFU91_05390) | ygaH | 1128784..1129119 (-) | 336 | WP_000119763.1 | L-valine transporter subunit YgaH | - |
| KFU91_RS05445 (KFU91_05395) | ygaZ | 1129109..1129846 (-) | 738 | WP_000445651.1 | L-valine exporter subunit YgaZ | - |
| KFU91_RS05450 (KFU91_05400) | - | 1129970..1131154 (-) | 1185 | WP_191007543.1 | MFS transporter | - |
| KFU91_RS05455 (KFU91_05405) | proX | 1131457..1132449 (-) | 993 | WP_001216521.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| KFU91_RS05460 (KFU91_05410) | proW | 1132507..1133571 (-) | 1065 | WP_112922171.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| KFU91_RS05465 (KFU91_05415) | proV | 1133564..1134766 (-) | 1203 | WP_000985494.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| KFU91_RS05470 (KFU91_05420) | nrdF | 1135120..1136079 (-) | 960 | WP_000777969.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| KFU91_RS05475 (KFU91_05425) | nrdE | 1136089..1138233 (-) | 2145 | WP_000246527.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| KFU91_RS05480 (KFU91_05430) | nrdI | 1138206..1138616 (-) | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| KFU91_RS05485 (KFU91_05435) | nrdH | 1138613..1138858 (-) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| KFU91_RS05490 (KFU91_05440) | ygaM | 1139106..1139435 (-) | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| KFU91_RS05495 (KFU91_05445) | ygaC | 1139587..1139931 (+) | 345 | WP_257198955.1 | DUF2002 family protein | - |
| KFU91_RS05500 (KFU91_05450) | alaE | 1139968..1140417 (-) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| KFU91_RS05505 (KFU91_05455) | stpA | 1141086..1141490 (+) | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| KFU91_RS05510 (KFU91_05460) | ygaP | 1141537..1142061 (-) | 525 | WP_001573143.1 | thiosulfate sulfurtransferase YgaP | - |
| KFU91_RS05515 (KFU91_05465) | ygaV | 1142071..1142370 (-) | 300 | WP_000137280.1 | helix-turn-helix transcriptional regulator | - |
| KFU91_RS05520 (KFU91_05470) | yqaE | 1142553..1142711 (+) | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| KFU91_RS05525 (KFU91_05475) | kbp | 1142795..1143244 (+) | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| KFU91_RS05530 (KFU91_05480) | csiR | 1143245..1143907 (-) | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| KFU91_RS05535 (KFU91_05485) | gabP | 1143928..1145328 (-) | 1401 | WP_025670183.1 | GABA permease | - |
| KFU91_RS05540 (KFU91_05490) | gabT | 1145566..1146846 (-) | 1281 | WP_001087611.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=562342 KFU91_RS05360 WP_000963143.1 1115559..1116620(+) (recA) [Escherichia coli strain MB64]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=562342 KFU91_RS05360 WP_000963143.1 1115559..1116620(+) (recA) [Escherichia coli strain MB64]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.