Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KFV11_RS04920 Genome accession   NZ_CP073809
Coordinates   967049..968116 (+) Length   355 a.a.
NCBI ID   WP_302054853.1    Uniprot ID   A0A9Q9BP62
Organism   Macrococcus equipercicus strain Epi0143-OL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 962049..973116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV11_RS04895 (KFV11_04920) - 962584..963852 (+) 1269 WP_254250486.1 pitrilysin family protein -
  KFV11_RS04900 (KFV11_04925) - 963845..964537 (+) 693 WP_149459764.1 SDR family NAD(P)-dependent oxidoreductase -
  KFV11_RS04905 (KFV11_04930) - 964549..965334 (+) 786 WP_254250487.1 YmfK family protein -
  KFV11_RS04910 (KFV11_04935) - 965347..966195 (+) 849 WP_254250488.1 helix-turn-helix domain-containing protein -
  KFV11_RS04915 (KFV11_04940) pgsA 966216..966797 (+) 582 WP_254250489.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KFV11_RS04920 (KFV11_04945) recA 967049..968116 (+) 1068 WP_302054853.1 recombinase RecA Machinery gene
  KFV11_RS04925 (KFV11_04950) rny 968291..969844 (+) 1554 WP_149459769.1 ribonuclease Y -
  KFV11_RS04930 (KFV11_04955) - 969982..970191 (-) 210 Protein_973 tyrosine-type recombinase/integrase -
  KFV11_RS04935 (KFV11_04960) - 970246..970862 (-) 617 Protein_974 IS30 family transposase -
  KFV11_RS04940 (KFV11_04965) - 970964..971308 (-) 345 WP_254250490.1 SdpI family protein -
  KFV11_RS04945 (KFV11_04970) - 971305..972033 (-) 729 WP_367305189.1 sporulation-delaying protein SdpB family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38463.81 Da        Isoelectric Point: 4.9334

>NTDB_id=560928 KFV11_RS04920 WP_302054853.1 967049..968116(+) (recA) [Macrococcus equipercicus strain Epi0143-OL]
MNERQKALDTVIKNMEKSFGKGAVMKLGENTARNVSTVSSGSITLDGALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQAQGGVAAFIDAEHALDPVYAQKLGVNIDELYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDT
HVGLQARLMSQALRKLSGAVSKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGVEVVGNRT
KIKVVKNKVAPPFRVAEVDIMYGQGISREGEIIDLGAEHEIIQKSGAWYSYNGERMGQGKENVKMYLKENPEILKEIDTK
IRQEIGIMPKDAVAEETPAEPEEDKAADLFEDELV

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=560928 KFV11_RS04920 WP_302054853.1 967049..968116(+) (recA) [Macrococcus equipercicus strain Epi0143-OL]
TTGAACGAACGTCAGAAAGCTTTAGATACAGTCATTAAAAATATGGAGAAATCTTTCGGTAAAGGAGCTGTCATGAAGCT
CGGAGAGAACACAGCACGTAACGTCTCTACAGTTTCCAGCGGTTCTATTACATTGGACGGCGCTTTAGGGGTAGGCGGCT
ATCCGAAGGGAAGAATCATTGAAATCTACGGACCTGAAAGCTCAGGTAAAACAACAGTCGCACTTCACGCGATTGCAGAA
GTTCAGGCGCAGGGCGGTGTCGCAGCGTTTATCGATGCGGAGCATGCACTGGATCCTGTCTATGCACAGAAACTGGGTGT
CAACATTGATGAGCTTTACTTGTCTCAGCCGGACCACGGGGAGCAGGGTCTGGAAATCGCGGAAGCATTCGTCCGCAGTG
GTGCCGTTGATATCATCGTTGTCGACTCAGTCGCAGCATTAACACCAAAGGCGGAGATTGAAGGCGAGATGGGTGACACG
CACGTCGGTCTGCAGGCGCGTCTTATGTCGCAGGCACTGCGTAAGTTATCAGGGGCTGTCTCAAAATCCAATACAATTGC
TATCTTCATCAACCAGATCCGTGAAAAAATCGGTGTGATGTTCGGTAATCCTGAAACAACACCAGGCGGCCGTGCGCTTA
AATTCTACAGCTCTGTCAGACTGGAAGTGAGACGTGCTGAGCAGTTGAAGCAAGGCGTGGAAGTGGTCGGTAACCGCACG
AAGATCAAAGTCGTGAAAAACAAAGTAGCGCCGCCATTCCGTGTAGCTGAAGTGGATATTATGTATGGTCAAGGGATTTC
ACGTGAAGGTGAGATCATCGATTTAGGTGCAGAGCATGAAATCATTCAGAAATCCGGCGCCTGGTATTCATATAACGGAG
AACGGATGGGTCAAGGTAAAGAAAACGTGAAGATGTATTTGAAGGAGAATCCTGAAATTCTGAAAGAGATCGATACGAAG
ATCCGTCAGGAAATCGGTATCATGCCAAAAGACGCGGTAGCAGAAGAAACGCCTGCTGAACCGGAAGAAGACAAAGCTGC
TGACTTGTTCGAAGACGAATTAGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

78.899

92.113

0.727
  recA Latilactobacillus sakei subsp. sakei 23K

68.466

99.155

0.679
  recA Streptococcus mutans UA159

65.625

99.155

0.651
  recA Streptococcus pyogenes NZ131

68.389

92.676

0.634
  recA Neisseria gonorrhoeae MS11

64.451

97.465

0.628
  recA Neisseria gonorrhoeae strain FA1090

64.451

97.465

0.628
  recA Neisseria gonorrhoeae MS11

64.451

97.465

0.628
  recA Streptococcus mitis NCTC 12261

64.912

96.338

0.625
  recA Streptococcus pneumoniae R6

65.385

95.211

0.623
  recA Streptococcus pneumoniae Rx1

65.385

95.211

0.623
  recA Streptococcus pneumoniae D39

65.385

95.211

0.623
  recA Streptococcus pneumoniae TIGR4

65.385

95.211

0.623
  recA Streptococcus mitis SK321

64.62

96.338

0.623
  recA Acinetobacter baylyi ADP1

62.286

98.592

0.614
  recA Lactococcus lactis subsp. cremoris KW2

64.583

94.648

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.5

90.141

0.608
  recA Vibrio cholerae strain A1552

67.5

90.141

0.608
  recA Ralstonia pseudosolanacearum GMI1000

64.848

92.958

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

92.113

0.6
  recA Pseudomonas stutzeri DSM 10701

60.458

98.31

0.594
  recA Helicobacter pylori strain NCTC11637

60.519

97.746

0.592
  recA Helicobacter pylori 26695

60.519

97.746

0.592
  recA Acinetobacter baumannii D1279779

64.907

90.704

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

93.239

0.577
  recA Glaesserella parasuis strain SC1401

58.239

99.155

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

91.268

0.558