Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KFV06_RS04885 Genome accession   NZ_CP073801
Coordinates   980207..981268 (+) Length   353 a.a.
NCBI ID   WP_101034940.1    Uniprot ID   A0A855GGN4
Organism   Macrococcoides caseolyticum strain 19Msa198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 975207..986268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV06_RS04860 (KFV06_04860) yfmH 975725..976993 (+) 1269 WP_012656777.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KFV06_RS04865 (KFV06_04865) - 976986..977693 (+) 708 WP_101041719.1 SDR family NAD(P)-dependent oxidoreductase -
  KFV06_RS04870 (KFV06_04870) - 977704..978495 (+) 792 WP_012656779.1 YmfK family protein -
  KFV06_RS04875 (KFV06_04875) - 978511..979332 (+) 822 WP_012656780.1 helix-turn-helix domain-containing protein -
  KFV06_RS04880 (KFV06_04880) pgsA 979349..979930 (+) 582 WP_012656781.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KFV06_RS04885 (KFV06_04885) recA 980207..981268 (+) 1062 WP_101034940.1 recombinase RecA Machinery gene
  KFV06_RS04890 (KFV06_04890) rny 981595..983154 (+) 1560 WP_012656783.1 ribonuclease Y -
  KFV06_RS04895 (KFV06_04895) - 983231..983413 (-) 183 WP_041635906.1 hypothetical protein -
  KFV06_RS04900 (KFV06_04900) - 983509..984303 (+) 795 WP_101042148.1 TIGR00282 family metallophosphoesterase -
  KFV06_RS04905 (KFV06_04905) - 984408..986141 (+) 1734 WP_086038590.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38445.60 Da        Isoelectric Point: 5.1195

>NTDB_id=560800 KFV06_RS04885 WP_101034940.1 980207..981268(+) (recA) [Macrococcoides caseolyticum strain 19Msa198]
MSERQKALDTVIKNMEKSFGKGAVMKLGDRTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKSGAWYSYDGERIGQGRENIKTYLKENPEVRDEIDQK
IRKAMGVGASLEETSAQKEEVPVEDKLFDDELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=560800 KFV06_RS04885 WP_101034940.1 980207..981268(+) (recA) [Macrococcoides caseolyticum strain 19Msa198]
ATGAGTGAAAGACAAAAAGCATTAGACACAGTTATTAAAAATATGGAAAAATCGTTTGGTAAAGGTGCAGTAATGAAATT
AGGAGATCGTACTGACCGTAACGTCTCTACAGTATCAAGCGGTTCTATTACATTAGATAGTGCACTTGGTGTTGGTGGTT
ATCCAAAAGGCCGTATTATAGAAATTTATGGTCCTGAAAGTTCAGGTAAGACAACGGTGGCACTACATGCCATCGCAGAG
GTACAGCGTCAAGGTGGCGTTGCCGCATTTATTGATGCTGAGCATGCGCTTGATCCGGTATATGCTAAGAATCTTGGAGT
AGATATCGAAAACCTTTACTTATCTCAACCTGACCACGGTGAACAAGGATTAGAAATTGCAGAAGCATTTGTCAGAAGTG
GTGCGGTAGACATTATTGTGGTCGATTCAGTTGCAGCTTTAACACCTAAAGCGGAAATTGAAGGAGAGATGGGAGACTCG
CATATGGGACTTCAAGCGCGTCTTATGTCTCAAGCGTTACGTAAGTTATCAGGTTCTGTATCGAAGTCTAACACGATTGC
AATATTCATCAACCAAGTACGTGAGAAGATTGGTGTAATGTTCGGTAATCCAGAAACGACGCCAGGTGGCCGTGCGCTTA
AATTCTATTCTTCAGTACGTCTCGAAGTACGTCGTGCAGAACAATTGAAACAAGGGCAGGAAATTGTAGGTAATAGAACA
AAGATCAAGGTCGTTAAAAACAAAGTTGCACCTCCTTTTAAAGTAGCAGAAGTTGATATTATGTACGGCAAAGGTATTTC
TCGTGAAGGGGAAATCGTTGATTTAGGTGCAGAATATGAAGTGCTGCAAAAGTCAGGGGCATGGTACTCTTATGATGGAG
AACGTATTGGCCAAGGGCGAGAAAATATTAAGACTTATCTGAAAGAAAACCCAGAAGTACGTGACGAAATCGATCAGAAG
ATTCGTAAGGCGATGGGTGTCGGTGCTTCATTAGAAGAGACATCAGCACAGAAAGAAGAAGTGCCGGTAGAAGATAAGTT
ATTCGACGATGAGTTAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855GGN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.453

92.635

0.708
  recA Latilactobacillus sakei subsp. sakei 23K

68.661

99.433

0.683
  recA Streptococcus pneumoniae TIGR4

61.725

100

0.649
  recA Streptococcus pneumoniae Rx1

61.725

100

0.649
  recA Streptococcus pneumoniae D39

61.725

100

0.649
  recA Streptococcus pneumoniae R6

61.725

100

0.649
  recA Streptococcus mitis NCTC 12261

62.534

100

0.643
  recA Streptococcus mitis SK321

62.259

100

0.64
  recA Streptococcus pyogenes NZ131

68.293

92.918

0.635
  recA Streptococcus mutans UA159

67.477

93.201

0.629
  recA Acinetobacter baylyi ADP1

64.286

95.184

0.612
  recA Acinetobacter baumannii D1279779

63.127

96.034

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.848

93.484

0.606
  recA Neisseria gonorrhoeae MS11

63.253

94.051

0.595
  recA Neisseria gonorrhoeae strain FA1090

63.253

94.051

0.595
  recA Neisseria gonorrhoeae MS11

63.253

94.051

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.615

92.068

0.595
  recA Pseudomonas stutzeri DSM 10701

59.599

98.867

0.589
  recA Vibrio cholerae strain A1552

64.596

91.218

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.596

91.218

0.589
  recA Ralstonia pseudosolanacearum GMI1000

65.815

88.669

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

93.201

0.581
  recA Helicobacter pylori 26695

62.769

92.068

0.578
  recA Helicobacter pylori strain NCTC11637

62.769

92.068

0.578
  recA Glaesserella parasuis strain SC1401

61.92

91.501

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.856

92.635

0.564