Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KFB96_RS04070 Genome accession   NZ_CP073760
Coordinates   897682..898740 (+) Length   352 a.a.
NCBI ID   WP_213459231.1    Uniprot ID   -
Organism   MAG: Thiocapsa sp. isolate M50B4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 892682..903740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFB96_RS04040 (KFB96_04040) - 893097..894566 (-) 1470 WP_213459219.1 2Fe-2S iron-sulfur cluster-binding protein -
  KFB96_RS04045 (KFB96_04045) - 894743..895069 (+) 327 WP_213459221.1 DUF1244 domain-containing protein -
  KFB96_RS04050 (KFB96_04050) - 895278..895772 (-) 495 WP_213459223.1 DUF302 domain-containing protein -
  KFB96_RS04055 (KFB96_04055) - 895811..896092 (-) 282 WP_213459225.1 cupin domain-containing protein -
  KFB96_RS04060 (KFB96_04060) - 896227..896736 (+) 510 WP_213459227.1 CinA family protein -
  KFB96_RS04065 (KFB96_04065) thpR 896729..897241 (+) 513 WP_213459229.1 RNA 2',3'-cyclic phosphodiesterase -
  KFB96_RS04070 (KFB96_04070) recA 897682..898740 (+) 1059 WP_213459231.1 recombinase RecA Machinery gene
  KFB96_RS04075 (KFB96_04075) - 898786..899241 (+) 456 WP_213459233.1 regulatory protein RecX -
  KFB96_RS04080 (KFB96_04080) alaS 899276..901876 (+) 2601 WP_213459235.1 alanine--tRNA ligase -
  KFB96_RS04085 (KFB96_04085) - 902061..903290 (+) 1230 WP_213459237.1 aspartate kinase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37397.95 Da        Isoelectric Point: 5.5632

>NTDB_id=560532 KFB96_RS04070 WP_213459231.1 897682..898740(+) (recA) [MAG: Thiocapsa sp. isolate M50B4]
MDDNRKKALAAALTQIEKQFGKGSVMRMGDTGVIREIEAISTGSLGLDLALGIGGVPKGRVVEIYGPESSGKTTLTLHII
AEAQKAGGTAAFVDAEHALDPGYAEKLGVNMNDLLVSQPDTGEQALEITDMLVRSGAVDVVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTGNIKRSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGN
ETKVKVVKNKVAPPFRQAEFDILYGQGISREGEIISLGVNEGFVEKSGAWYSYEGNRIGQGKDNARVFLCENPEIAKAIE
AKIRDKLLPKIGDPLPGGGGVAPIAAEAPEEL

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=560532 KFB96_RS04070 WP_213459231.1 897682..898740(+) (recA) [MAG: Thiocapsa sp. isolate M50B4]
ATGGACGACAACCGCAAGAAGGCACTGGCTGCCGCGCTGACCCAGATCGAAAAACAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACACCGGTGTCATTCGGGAGATCGAGGCCATCTCGACCGGCTCGCTCGGTCTGGATCTCGCGCTCGGCATCG
GCGGTGTGCCCAAGGGCCGCGTGGTCGAGATCTACGGCCCCGAATCCTCCGGCAAGACCACACTGACCCTGCACATCATC
GCCGAGGCGCAAAAGGCCGGCGGAACGGCGGCCTTCGTCGATGCCGAGCATGCCCTGGATCCGGGCTATGCCGAGAAGCT
CGGCGTGAATATGAACGACCTGCTGGTCTCCCAGCCCGATACCGGCGAGCAGGCGCTCGAGATCACCGACATGCTGGTGC
GCTCCGGCGCGGTCGATGTCGTGGTCGTCGACTCGGTCGCAGCCCTGACCCCGAAGGCCGAGATCGAAGGCGAGATGGGC
GACTCGCACGTCGGCCTGCAGGCGCGTCTGATGTCCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACTG
TCTGGTCATCTTCATCAATCAGATCCGAATGAAGATCGGCGTCATGTTTGGCTCCCCGGAAACCACAACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGGCTGGATATCCGCCGCATCGGCAGCATCAAGAAGGGCGACGAGGTCATCGGCAAC
GAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAGACAGGCCGAGTTCGACATCCTCTACGGCCAAGG
CATCTCGCGCGAAGGCGAGATCATCAGCCTGGGCGTGAACGAGGGCTTCGTCGAGAAGTCCGGCGCCTGGTACAGCTACG
AGGGCAATCGCATCGGCCAGGGCAAGGACAACGCGCGGGTCTTCCTGTGCGAGAACCCCGAGATCGCCAAGGCGATCGAG
GCGAAGATTCGCGACAAGCTGCTGCCCAAGATCGGCGATCCGCTGCCCGGCGGCGGAGGAGTCGCACCGATCGCCGCCGA
GGCCCCTGAAGAGCTTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.183

93.182

0.747
  recA Ralstonia pseudosolanacearum GMI1000

75.595

95.455

0.722
  recA Acinetobacter baylyi ADP1

75.075

94.602

0.71
  recA Neisseria gonorrhoeae MS11

75

92.045

0.69
  recA Neisseria gonorrhoeae MS11

75

92.045

0.69
  recA Neisseria gonorrhoeae strain FA1090

75

92.045

0.69
  recA Vibrio cholerae strain A1552

74.085

93.182

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.085

93.182

0.69
  recA Acinetobacter baumannii D1279779

73.476

93.182

0.685
  recA Glaesserella parasuis strain SC1401

73.846

92.33

0.682
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.964

94.886

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.902

93.182

0.642
  recA Helicobacter pylori strain NCTC11637

64.62

97.159

0.628
  recA Helicobacter pylori 26695

64.62

97.159

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

68.012

91.477

0.622
  recA Streptococcus mutans UA159

62.27

92.614

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

63.043

91.477

0.577
  recA Streptococcus pyogenes NZ131

60.182

93.466

0.562
  recA Streptococcus pneumoniae D39

60.55

92.898

0.562
  recA Streptococcus pneumoniae Rx1

60.55

92.898

0.562
  recA Streptococcus pneumoniae R6

60.55

92.898

0.562
  recA Streptococcus pneumoniae TIGR4

60.55

92.898

0.562
  recA Streptococcus mitis NCTC 12261

60.494

92.045

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.756

93.182

0.557
  recA Streptococcus mitis SK321

60.185

92.045

0.554
  recA Lactococcus lactis subsp. cremoris KW2

60.185

92.045

0.554