Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KD909_RS06560 Genome accession   NZ_CP073755
Coordinates   1264103..1265152 (+) Length   349 a.a.
NCBI ID   WP_012726480.1    Uniprot ID   C4L2V3
Organism   Exiguobacterium sp. PFWT01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1259103..1270152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD909_RS06535 (KD909_06535) ymfI 1259662..1260357 (+) 696 WP_012726485.1 elongation factor P 5-aminopentanone reductase -
  KD909_RS06540 (KD909_06540) - 1260451..1261226 (+) 776 Protein_1263 YmfK family protein -
  KD909_RS06545 (KD909_06545) - 1261254..1262126 (+) 873 WP_211782716.1 RodZ family helix-turn-helix domain-containing protein -
  KD909_RS06550 (KD909_06550) pgsA 1262159..1262737 (+) 579 WP_012726482.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KD909_RS06555 (KD909_06555) - 1262800..1264026 (+) 1227 WP_211782717.1 competence/damage-inducible protein A -
  KD909_RS06560 (KD909_06560) recA 1264103..1265152 (+) 1050 WP_012726480.1 recombinase RecA Machinery gene
  KD909_RS06565 (KD909_06565) rny 1265341..1266903 (+) 1563 WP_012726479.1 ribonuclease Y -
  KD909_RS06570 (KD909_06570) - 1266952..1267746 (+) 795 WP_211782718.1 TIGR00282 family metallophosphoesterase -
  KD909_RS06575 (KD909_06575) - 1267773..1268033 (+) 261 WP_012726477.1 stage V sporulation protein S -
  KD909_RS06580 (KD909_06580) tdh 1268200..1269276 (+) 1077 WP_211782719.1 L-threonine 3-dehydrogenase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37918.03 Da        Isoelectric Point: 4.8474

>NTDB_id=560516 KD909_RS06560 WP_012726480.1 1264103..1265152(+) (recA) [Exiguobacterium sp. PFWT01]
MSDRKQALEMALRQIEKQFGKGSIMRLGENTDQQVSVIPSGSIALDVALGAGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQKRGGQAAFVDAEHALDPKYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGQDMVGNRT
KIKIVKNKIAPPFKTAEVDIMYGEGISREGELIDIGADLDIVQKSGAWYSFNEERLGQGRENAKQYMKENPAIAAEVEQQ
IRDHYGLNGEKTVTVEGEDDEVLSLLDDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=560516 KD909_RS06560 WP_012726480.1 1264103..1265152(+) (recA) [Exiguobacterium sp. PFWT01]
ATGAGTGATCGTAAACAAGCGTTAGAAATGGCATTGCGCCAGATTGAAAAACAATTCGGTAAAGGCTCAATCATGCGCCT
TGGTGAAAATACAGACCAACAAGTATCGGTCATCCCTTCAGGGTCAATCGCCCTCGACGTCGCGCTCGGTGCGGGTGGAT
ATCCACGCGGTCGTGTCATCGAAGTATACGGACCAGAATCTTCAGGTAAGACGACGGTCGCCCTTCATGCGATTGCAGAA
GTCCAAAAGCGTGGCGGTCAAGCAGCATTCGTTGACGCCGAGCACGCACTCGATCCGAAGTATGCTAAAAATCTTGGGGT
CAACATCGATGAGTTGCTCCTTTCACAGCCGGATACTGGGGAGCAAGCGCTCGAAATCGCTGAAGCGCTCGTTCGCTCGG
GAGCAGTTGATATCCTCGTCGTCGACTCGGTTGCGGCACTCGTACCGAAAGCCGAAATCGAAGGGGAAATGGGAGACTCG
CACGTCGGTCTTCAAGCCCGTTTGATGTCTCAAGCACTTCGTAAGTTGTCTGGTGCGACGAACAAGTCGAAAACGATTGT
CATCTTCATCAACCAAATCCGCGAGAAGATCGGGATCATGTTCGGTAACCCGGAAACGACTCCAGGGGGCCGTGCCTTGA
AATTCTACTCTTCTGTACGTCTTGAAGTTCGTCGTGCGGAGACACTTAAACAAGGTCAAGATATGGTCGGGAACCGTACG
AAGATCAAGATTGTAAAAAACAAGATTGCACCTCCGTTCAAAACAGCGGAAGTCGATATCATGTACGGTGAGGGGATCTC
GCGTGAAGGGGAACTCATCGATATCGGTGCAGACCTCGACATCGTTCAAAAGAGCGGAGCTTGGTACTCGTTCAATGAAG
AACGTCTTGGTCAAGGTCGTGAAAACGCCAAGCAATACATGAAAGAAAATCCAGCGATCGCAGCTGAGGTCGAACAACAG
ATTCGAGATCACTACGGATTGAACGGAGAAAAAACGGTCACGGTCGAAGGCGAAGACGACGAAGTCCTCTCACTTCTCGA
TGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C4L2V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.982

95.415

0.782
  recA Latilactobacillus sakei subsp. sakei 23K

70.029

99.427

0.696
  recA Streptococcus mitis SK321

66.763

99.14

0.662
  recA Streptococcus mutans UA159

66.379

99.713

0.662
  recA Streptococcus pneumoniae Rx1

68.182

94.556

0.645
  recA Streptococcus mitis NCTC 12261

68.182

94.556

0.645
  recA Streptococcus pneumoniae D39

68.182

94.556

0.645
  recA Streptococcus pneumoniae R6

68.182

94.556

0.645
  recA Streptococcus pneumoniae TIGR4

68.182

94.556

0.645
  recA Streptococcus pyogenes NZ131

67.683

93.983

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.824

97.421

0.622
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.556

0.622
  recA Neisseria gonorrhoeae MS11

62.757

97.708

0.613
  recA Neisseria gonorrhoeae MS11

62.757

97.708

0.613
  recA Neisseria gonorrhoeae strain FA1090

62.757

97.708

0.613
  recA Acinetobacter baumannii D1279779

61.628

98.567

0.607
  recA Vibrio cholerae strain A1552

65.421

91.977

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

91.977

0.602
  recA Acinetobacter baylyi ADP1

59.77

99.713

0.596
  recA Ralstonia pseudosolanacearum GMI1000

63.303

93.696

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

93.696

0.582
  recA Glaesserella parasuis strain SC1401

60.417

96.275

0.582
  recA Helicobacter pylori 26695

61.702

94.269

0.582
  recA Helicobacter pylori strain NCTC11637

61.702

94.269

0.582
  recA Pseudomonas stutzeri DSM 10701

63.125

91.691

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

92.55

0.564