Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KFF03_RS13935 Genome accession   NZ_CP073745
Coordinates   3067541..3068578 (-) Length   345 a.a.
NCBI ID   WP_255857528.1    Uniprot ID   A0A9J7ADP7
Organism   Bacterioplanoides sp. SCSIO 12839     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3062541..3073578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFF03_RS13905 (KFF03_13850) - 3062866..3063069 (+) 204 WP_255857522.1 DUF2892 domain-containing protein -
  KFF03_RS13910 (KFF03_13855) - 3063157..3064146 (+) 990 WP_255857523.1 hypothetical protein -
  KFF03_RS13915 (KFF03_13860) - 3064147..3064395 (+) 249 WP_255857524.1 hypothetical protein -
  KFF03_RS13920 (KFF03_13865) - 3064511..3065806 (+) 1296 WP_255857525.1 NAD(P)/FAD-dependent oxidoreductase -
  KFF03_RS13925 (KFF03_13870) - 3065753..3066820 (-) 1068 WP_255857526.1 AraC family transcriptional regulator -
  KFF03_RS13930 (KFF03_13875) - 3067084..3067560 (-) 477 WP_255857527.1 regulatory protein RecX -
  KFF03_RS13935 (KFF03_13880) recA 3067541..3068578 (-) 1038 WP_255857528.1 recombinase RecA Machinery gene
  KFF03_RS13940 (KFF03_13885) mutS 3068821..3071481 (+) 2661 Protein_2720 DNA mismatch repair protein MutS -
  KFF03_RS13945 (KFF03_13890) fdxA 3071704..3072033 (+) 330 WP_255857529.1 ferredoxin FdxA -
  KFF03_RS13950 (KFF03_13895) rpoS 3072319..3073284 (-) 966 WP_255857530.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36859.18 Da        Isoelectric Point: 4.7755

>NTDB_id=560382 KFF03_RS13935 WP_255857528.1 3067541..3068578(-) (recA) [Bacterioplanoides sp. SCSIO 12839]
MDANKQKALDAALGQIERQFGKGAIMKMGEQPREAIPAVSTGSLGLDIALGIGGLPMGRIVEIYGPESSGKTTMCLSAMA
QAQKAGKTVAIIDAEHALDPLYAEKLGIDLDSLLVSQPDTGEQALEICDSLVRSGAVDVIVVDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKITANVKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKQGDEIVGNE
TRVKVVKNKVSPPFRQAEFQIMYGQGIYHMGEVIDLGVKCELVEKSGAWYSYKGNKIGQGKANASKFLEENPEMAAEIEA
QIRAQLLNISNEESAAEDVDAAEEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=560382 KFF03_RS13935 WP_255857528.1 3067541..3068578(-) (recA) [Bacterioplanoides sp. SCSIO 12839]
ATGGACGCGAATAAGCAAAAAGCGCTTGATGCTGCACTGGGCCAGATTGAACGTCAGTTTGGTAAAGGCGCCATCATGAA
GATGGGTGAACAACCACGTGAAGCGATTCCGGCGGTTTCCACTGGTTCTCTGGGGCTTGATATTGCTTTGGGCATTGGCG
GTCTGCCAATGGGCCGTATTGTTGAGATTTATGGCCCGGAAAGCTCAGGTAAAACCACCATGTGTTTGTCAGCGATGGCA
CAGGCGCAAAAGGCTGGCAAAACCGTTGCCATCATTGATGCGGAGCACGCGTTAGATCCACTGTATGCCGAGAAGCTGGG
TATTGATCTGGATAGCCTGCTGGTATCACAGCCGGATACGGGTGAACAGGCACTGGAAATCTGTGACAGCTTGGTTCGTT
CTGGTGCGGTTGATGTGATTGTGGTGGACTCCGTTGCGGCGTTAACACCAAAAGCTGAAATTGAAGGCGATATGGGTGAT
TCCCACGTTGGCTTACAGGCTCGTCTGATGTCTCAGGCGCTGCGTAAAATTACCGCCAACGTTAAAAATGCGAACTGTCT
GGTGATCTTTATTAACCAGATTCGTATGAAAATTGGTGTGATGTTTGGTAGCCCGGAAACCACCACCGGTGGTAATGCAT
TAAAATTCTACTCATCTGTTCGTTTGGATATTCGTCGTACCGGTTCAGTGAAGCAGGGTGATGAAATTGTTGGTAACGAA
ACCCGGGTGAAAGTGGTGAAAAACAAAGTATCACCACCGTTCCGCCAGGCAGAATTCCAGATTATGTATGGTCAGGGCAT
TTACCACATGGGTGAGGTTATTGACCTGGGTGTGAAATGTGAGCTGGTTGAGAAGTCTGGAGCCTGGTATAGCTACAAAG
GCAATAAGATTGGTCAGGGTAAAGCTAACGCTTCCAAGTTCCTGGAAGAAAATCCTGAAATGGCCGCTGAAATTGAAGCT
CAGATTCGTGCCCAGTTGCTAAATATCTCAAATGAAGAATCGGCTGCCGAAGATGTGGATGCAGCAGAAGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.035

100

0.783
  recA Acinetobacter baylyi ADP1

73.669

97.971

0.722
  recA Vibrio cholerae strain A1552

71.512

99.71

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.512

99.71

0.713
  recA Glaesserella parasuis strain SC1401

71.261

98.841

0.704
  recA Acinetobacter baumannii D1279779

74.006

94.783

0.701
  recA Neisseria gonorrhoeae MS11

72.923

94.203

0.687
  recA Neisseria gonorrhoeae MS11

72.923

94.203

0.687
  recA Neisseria gonorrhoeae strain FA1090

72.923

94.203

0.687
  recA Ralstonia pseudosolanacearum GMI1000

71.704

90.145

0.646
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.478

100

0.635
  recA Helicobacter pylori 26695

62.575

96.812

0.606
  recA Helicobacter pylori strain NCTC11637

62.575

96.812

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

64.486

93.043

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

95.362

0.591
  recA Streptococcus mitis NCTC 12261

58.721

99.71

0.586
  recA Streptococcus mitis SK321

59.064

99.13

0.586
  recA Streptococcus pneumoniae D39

57.895

99.13

0.574
  recA Streptococcus pneumoniae TIGR4

57.895

99.13

0.574
  recA Streptococcus pneumoniae Rx1

57.895

99.13

0.574
  recA Streptococcus pneumoniae R6

57.895

99.13

0.574
  recA Streptococcus mutans UA159

59.692

94.203

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

60.312

92.754

0.559
  recA Streptococcus pyogenes NZ131

58.282

94.493

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.204

93.623

0.545
  recA Lactococcus lactis subsp. cremoris KW2

55.215

94.493

0.522