Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KDB76_RS06715 Genome accession   NZ_CP073661
Coordinates   1472036..1473082 (+) Length   348 a.a.
NCBI ID   WP_038408827.1    Uniprot ID   -
Organism   Pseudomonas sp. JS425     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1467036..1478082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDB76_RS06695 (KDB76_06695) fdxA 1467519..1467842 (-) 324 WP_004375459.1 ferredoxin FdxA -
  KDB76_RS06700 (KDB76_06700) mutS 1467983..1470556 (-) 2574 WP_024086401.1 DNA mismatch repair protein MutS -
  KDB76_RS06705 (KDB76_06705) - 1470828..1471310 (+) 483 WP_013971338.1 CinA family protein -
  KDB76_RS06710 (KDB76_06710) - 1471414..1471911 (+) 498 Protein_1313 ATPase domain-containing protein -
  KDB76_RS06715 (KDB76_06715) recA 1472036..1473082 (+) 1047 WP_038408827.1 recombinase RecA Machinery gene
  KDB76_RS06720 (KDB76_06720) - 1473888..1475279 (-) 1392 WP_010955129.1 aspartate aminotransferase family protein -
  KDB76_RS06725 (KDB76_06725) - 1475301..1476773 (-) 1473 WP_038408829.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  KDB76_RS06730 (KDB76_06730) doeB 1477033..1478028 (-) 996 WP_038408831.1 N(2)-acetyl-L-2,4-diaminobutanoate deacetylase DoeB -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37357.89 Da        Isoelectric Point: 5.1490

>NTDB_id=559802 KDB76_RS06715 WP_038408827.1 1472036..1473082(+) (recA) [Pseudomonas sp. JS425]
MDQAKNKALEMALSQIEKQFGKGAIMRLGSDRTMDIDVVSTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLTLSVIA
EAQRQGLTCAFVDAEHALDPIYAAKLGVNIDDLLCSQPDTGEQALEIVDILTRSGAVNVIVVDSVAALVPKAEIEGEIGD
SHVGLAARMMSQAMRKITGNLKNSNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGSE
TRVKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVSNNFVEKSGAWYSFEGNKIGQGKANTMKWLLENKPAMDKLEG
MIREKLMSKPQAEAATNQSAIEEPADDY

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=559802 KDB76_RS06715 WP_038408827.1 1472036..1473082(+) (recA) [Pseudomonas sp. JS425]
ATGGATCAGGCAAAAAACAAAGCGTTGGAAATGGCTCTTTCTCAGATCGAGAAGCAGTTTGGTAAGGGTGCCATCATGCG
GCTCGGCTCCGACCGCACAATGGACATCGATGTTGTTTCGACCGGTTCTCTTGGTCTGGACATCGCTCTGGGCGTGGGTG
GTCTGCCACGTGGTCGTATCGTTGAAATCTACGGCCCTGAGTCCTCTGGTAAAACTACCCTGACTCTTTCTGTAATTGCC
GAAGCTCAGCGTCAAGGTTTGACCTGCGCATTCGTCGATGCCGAACACGCACTTGATCCAATCTACGCCGCCAAACTCGG
CGTAAACATCGATGATCTTCTGTGCTCGCAGCCAGACACTGGCGAACAGGCACTTGAGATCGTAGACATTCTGACTCGTT
CGGGTGCGGTTAACGTTATTGTTGTCGACTCCGTTGCTGCACTTGTACCGAAGGCTGAGATTGAAGGCGAGATCGGGGAC
TCCCATGTTGGCCTTGCCGCCCGAATGATGTCTCAGGCGATGCGGAAGATCACTGGTAACCTGAAGAACTCCAACACTAT
GTGTATCTTCATTAACCAGATCCGTATGAAGATCGGTGTCATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCCC
TGAAGTTTTACGCCTCGGTACGTCTGGACATTCGCCGTATTGGCGCGGTCAAGGAAGGCGACGAGGTGGTTGGTAGCGAA
ACCCGCGTTAAAGTGGTCAAGAACAAAGTTGCTGCTCCTTTCAGGCAGGCAGAGTTCCAGATCGTTTACGGTCAGGGTAT
CAGCAAGGCTGGCGAGATCGTTGACCTGGCTGTCTCCAACAACTTCGTTGAGAAGTCCGGTGCTTGGTACTCCTTCGAAG
GTAACAAGATTGGCCAAGGTAAGGCCAATACCATGAAGTGGCTGCTGGAAAACAAGCCTGCCATGGACAAGCTGGAAGGT
ATGATTCGCGAGAAGCTGATGTCGAAGCCTCAAGCTGAAGCAGCTACCAACCAGTCCGCAATTGAAGAGCCGGCTGACGA
CTATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.064

93.966

0.724
  recA Vibrio cholerae strain A1552

74.695

94.253

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.253

0.704
  recA Acinetobacter baylyi ADP1

70.349

98.851

0.695
  recA Glaesserella parasuis strain SC1401

67.521

100

0.681
  recA Acinetobacter baumannii D1279779

71.341

94.253

0.672
  recA Ralstonia pseudosolanacearum GMI1000

68.598

94.253

0.647
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae strain FA1090

68.519

93.103

0.638
  recA Bacillus subtilis subsp. subtilis str. 168

64.062

91.954

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

95.69

0.583
  recA Helicobacter pylori strain NCTC11637

61.702

94.54

0.583
  recA Helicobacter pylori 26695

61.398

94.54

0.58
  recA Streptococcus mitis NCTC 12261

57.265

100

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.856

93.966

0.572
  recA Streptococcus mutans UA159

56.772

99.713

0.566
  recA Streptococcus pneumoniae D39

60.123

93.678

0.563
  recA Streptococcus pneumoniae Rx1

60.123

93.678

0.563
  recA Streptococcus pneumoniae R6

60.123

93.678

0.563
  recA Streptococcus pneumoniae TIGR4

60.123

93.678

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.271

94.54

0.56
  recA Streptococcus mitis SK321

59.752

92.816

0.555
  recA Streptococcus pyogenes NZ131

58.896

93.678

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.561

91.667

0.546
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.816

0.537