Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KDD30_RS12865 Genome accession   NZ_CP073578
Coordinates   2789603..2790670 (-) Length   355 a.a.
NCBI ID   WP_211646208.1    Uniprot ID   -
Organism   Photobacterium sp. GJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2784603..2795670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDD30_RS12850 (KDD30_12850) csrA 2785630..2785827 (-) 198 WP_211646207.1 carbon storage regulator CsrA -
  KDD30_RS12855 (KDD30_12855) alaS 2786173..2788796 (-) 2624 Protein_2478 alanine--tRNA ligase -
  KDD30_RS12860 (KDD30_12860) recX 2788976..2789443 (-) 468 WP_249199141.1 recombination regulator RecX -
  KDD30_RS12865 (KDD30_12865) recA 2789603..2790670 (-) 1068 WP_211646208.1 recombinase RecA Machinery gene
  KDD30_RS12870 (KDD30_12870) pncC 2790801..2791289 (-) 489 WP_211649935.1 nicotinamide-nucleotide amidase -
  KDD30_RS12875 (KDD30_12875) mutS 2791475..2794012 (+) 2538 WP_371826096.1 DNA mismatch repair protein MutS -
  KDD30_RS12880 (KDD30_12880) rpoS 2794147..2795148 (-) 1002 WP_211646210.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38158.61 Da        Isoelectric Point: 4.8701

>NTDB_id=559318 KDD30_RS12865 WP_211646208.1 2789603..2790670(-) (recA) [Photobacterium sp. GJ3]
MDDNKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLETIA
AAQRKGKTCAFIDAEHALDPIYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKQADTQILYGQGFNRNGELIDLGVKQKLIEKAGAWYSYQGDKIGQGKANACKYLSENPEIAQTIDK
LLREQLLTPANLSDEDAELASADAEKIDAQEGEAF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=559318 KDD30_RS12865 WP_211646208.1 2789603..2790670(-) (recA) [Photobacterium sp. GJ3]
ATGGACGACAACAAACAGAAGGCTCTTGCCGCTGCCCTGGGTCAGATCGAAAAGCAGTTCGGTAAAGGCTCCATCATGAA
GCTGGGTGACAACCGTACGATGGATATCGAAACCATCTCAACCGGTTCTCTGTCACTGGATATCGCACTGGGCGCTGGCG
GCCTGCCAATGGGTCGTATCGTAGAAATCTATGGTCCGGAATCTTCAGGTAAAACCACGCTGACGCTGGAAACCATTGCT
GCAGCACAGCGTAAAGGCAAAACCTGTGCCTTCATCGATGCTGAGCACGCACTGGATCCGATTTATGCGAAGAAACTGGG
CGTGAACATCGATGAGCTGCTGGTTTCTCAGCCGGATACCGGTGAGCAGGCACTCGAAATCTGTGACGCGCTGGCACGCT
CTGGTGCTGTTGATCTGATTGTTGTCGACTCCGTTGCCGCCCTGACCCCGAAAGCTGAAATCGAAGGCGAAATGGGTGAC
TCTCACATGGGTCTGCAAGCTCGGATGCTTTCTCAGGCGATGCGTAAGCTGACCGGTAACCTGAAACAGTCAAACTGTAT
GTGTATCTTCATCAACCAGATCCGAATGAAGATTGGTGTGATGTTTGGGAACCCGGAAACAACAACAGGTGGTAACGCCC
TGAAATTCTATGCTTCTGTTCGTCTGGACATCCGCCGTACCGGCGCGATCAAAGAAGGCGACGAAGTGGTGGGGAACGAA
ACCCGCATTAAAGTTGTGAAAAACAAAATTGCAGCGCCGTTTAAGCAAGCGGATACGCAGATTCTTTACGGACAGGGTTT
CAACCGCAATGGCGAGCTGATAGACCTGGGCGTGAAGCAAAAACTGATTGAAAAAGCTGGTGCCTGGTACAGCTATCAGG
GTGACAAGATTGGTCAGGGTAAGGCGAATGCCTGTAAGTACCTGTCTGAGAACCCGGAAATTGCACAAACCATTGACAAG
CTGTTGCGTGAGCAATTGCTGACGCCTGCAAATCTGAGCGATGAAGATGCTGAGCTGGCGAGTGCAGATGCAGAAAAGAT
TGATGCTCAGGAAGGCGAAGCTTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

91.867

93.521

0.859
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.867

93.521

0.859
  recA Pseudomonas stutzeri DSM 10701

77.108

93.521

0.721
  recA Acinetobacter baylyi ADP1

74.481

94.93

0.707
  recA Acinetobacter baumannii D1279779

75

92.394

0.693
  recA Glaesserella parasuis strain SC1401

71.125

92.676

0.659
  recA Neisseria gonorrhoeae MS11

69.753

91.268

0.637
  recA Neisseria gonorrhoeae MS11

69.753

91.268

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.753

91.268

0.637
  recA Ralstonia pseudosolanacearum GMI1000

70.794

88.732

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

92.113

0.586
  recA Streptococcus pneumoniae R6

61.176

95.775

0.586
  recA Streptococcus pneumoniae Rx1

61.176

95.775

0.586
  recA Streptococcus pneumoniae D39

61.176

95.775

0.586
  recA Streptococcus pneumoniae TIGR4

61.176

95.775

0.586
  recA Streptococcus mitis NCTC 12261

62.27

91.831

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

93.239

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

63.043

90.704

0.572
  recA Streptococcus mutans UA159

61.774

92.113

0.569
  recA Streptococcus mitis SK321

61.963

91.831

0.569
  recA Streptococcus pyogenes NZ131

60.923

91.549

0.558
  recA Helicobacter pylori strain NCTC11637

60.245

92.113

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.54

88.732

0.555
  recA Helicobacter pylori 26695

59.939

92.113

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.752

90.986

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

87.887

0.541