Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KDJ92_RS03895 Genome accession   NZ_CP073283
Coordinates   844083..845276 (+) Length   397 a.a.
NCBI ID   WP_041981820.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain BINF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 839083..850276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDJ92_RS03875 (KDJ92_03875) pgsA 841668..842318 (+) 651 WP_012577310.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KDJ92_RS03880 (KDJ92_03880) - 842330..842863 (+) 534 WP_212105615.1 CinA family protein -
  KDJ92_RS03885 (KDJ92_03885) - 842922..843437 (+) 516 WP_077323764.1 helix-turn-helix domain-containing protein -
  KDJ92_RS03890 (KDJ92_03890) - 843549..843782 (+) 234 WP_007052642.1 DUF3046 domain-containing protein -
  KDJ92_RS03895 (KDJ92_03895) recA 844083..845276 (+) 1194 WP_041981820.1 recombinase RecA Machinery gene
  KDJ92_RS03900 (KDJ92_03900) - 845279..845872 (+) 594 WP_012577315.1 regulatory protein RecX -
  KDJ92_RS03910 (KDJ92_03910) hpf 846730..847392 (+) 663 WP_012577316.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 41790.53 Da        Isoelectric Point: 5.8610

>NTDB_id=558848 KDJ92_RS03895 WP_041981820.1 844083..845276(+) (recA) [Bifidobacterium longum subsp. infantis strain BINF]
MALETKPAKDPAAEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPEQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDGEAAAAAAVSEAAAADVAKDSKAAAASAAKTTRAKAGTAKA

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=558848 KDJ92_RS03895 WP_041981820.1 844083..845276(+) (recA) [Bifidobacterium longum subsp. infantis strain BINF]
ATGGCACTTGAGACCAAGCCGGCCAAGGACCCGGCAGCCGAGGACAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACCGCGCTGGCGCAGGTCGAGAAGAGCTTTGGCAAAGGTTCCGCAATGCGACTGGGCGACCAGCCCGAGCAGAACG
TCGAGGTGATTCCCACCGGTTCGTTGGCCCTCGATATGGCGCTCGGCATCGGCGGCCTGCCCAAGGGCCGCATCGTGGAG
ATCTACGGCCCCGAATCATCCGGTAAGACCACGCTCGCATTGCATGTGGTGGCCAATGCCCAGAAGAAGGGCGGCGTGGC
GGCCTACATCGATGCCGAACACGCACTCGACCCGGCCTACGCCCGCAAGCTCGGCGTGGACACCGACTCGCTCATCGTCT
CCCAGCCGGATAACGGCGAGCAGGCCCTCGAAATCGCCGACATGCTGATTCGCTCCGGTGCACTTGACGTCATTGTCATC
GACTCGGTCGCCGCCCTAGTGCCGAAGGCCGAAATCGAAGGCGAAATGGGAGACAGCCATGTTGGTTTGCAGGCCCGACT
CATGAGTCAGGCGCTGCGCAAGATGACCGGCGCGTTGGCTCAGGCCGGCACCACCGCCATCTTCATCAACCAGCTGCGTG
AGAAGATCGGCGTGTTCTTCGGCAACCCTGAAACCACCACCGGTGGTAAAGCTCTGAAGTTCTACGCCTCCGTGCGTCTC
GACATCCGCCGCATCCAGACCTTGAAGAACGGCGACGAAGCGGTGGGCAACCGCACGCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCTTTCAAGTCCGCCGAATTCGACATGCTCTACGGTGAAGGCATTTCCCGTGAGGGCTCGGTGATCGACA
TGGCCCAGCAGGTTGGCGTGGTCAAGAAGTCCGGTTCGTGGTTCACCTATGAGGGTGATCAGCTCGGTCAGGGACGAGAG
AAGGTCCGTCAGTTCCTTAAGGACAACCCGGCCATCACCGAGGAGATTGAGAACAAGGTCAAGGCCGAGTTCGGTCTGAT
CGGTTCCGCCGATCAGTTCGCGGAAGATGGCGAAGCCGCAGCAGCGGCCGCCGTCAGCGAGGCCGCTGCGGCCGACGTGG
CCAAGGACAGCAAGGCCGCAGCGGCGTCTGCTGCCAAAACGACCCGTGCCAAGGCCGGCACGGCGAAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.465

83.879

0.549
  recA Acinetobacter baylyi ADP1

63.824

85.642

0.547
  recA Acinetobacter baumannii D1279779

64.653

83.375

0.539
  recA Streptococcus mitis NCTC 12261

59.718

89.421

0.534
  recA Neisseria gonorrhoeae MS11

64.242

83.123

0.534
  recA Neisseria gonorrhoeae MS11

64.242

83.123

0.534
  recA Neisseria gonorrhoeae strain FA1090

64.242

83.123

0.534
  recA Streptococcus mitis SK321

59.437

89.421

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

82.62

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

64.506

81.612

0.526
  recA Ralstonia pseudosolanacearum GMI1000

66.454

78.841

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

83.375

0.519
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.777

81.36

0.519
  recA Vibrio cholerae strain A1552

63.777

81.36

0.519
  recA Glaesserella parasuis strain SC1401

63.75

80.605

0.514
  recA Streptococcus pneumoniae D39

59.824

85.894

0.514
  recA Streptococcus pneumoniae TIGR4

59.824

85.894

0.514
  recA Streptococcus pneumoniae Rx1

59.824

85.894

0.514
  recA Streptococcus pneumoniae R6

59.824

85.894

0.514
  recA Streptococcus mutans UA159

61.818

83.123

0.514
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

81.864

0.509
  recA Lactococcus lactis subsp. cremoris KW2

61.212

83.123

0.509
  recA Streptococcus pyogenes NZ131

61.28

82.62

0.506
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

84.887

0.504
  recA Helicobacter pylori strain NCTC11637

60.671

82.62

0.501
  recA Helicobacter pylori 26695

60.671

82.62

0.501