Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SMWW4_RS04195 Genome accession   NC_020211
Coordinates   925691..926755 (+) Length   354 a.a.
NCBI ID   WP_004932541.1    Uniprot ID   A0AAT9EFP1
Organism   Serratia marcescens WW4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920691..931755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMWW4_RS04175 (SMWW4_v1c08210) chbR 921700..922548 (+) 849 WP_015376697.1 transcriptional regulator ChbR -
  SMWW4_RS04180 (SMWW4_v1c08220) chbG 922697..923458 (+) 762 WP_015376698.1 chitin disaccharide deacetylase -
  SMWW4_RS04185 (SMWW4_v1c08230) - 923468..924847 (-) 1380 WP_015376699.1 MFS transporter -
  SMWW4_RS04190 (SMWW4_v1c08240) pncC 925091..925579 (+) 489 WP_015376700.1 nicotinamide-nucleotide amidase -
  SMWW4_RS04195 (SMWW4_v1c08250) recA 925691..926755 (+) 1065 WP_004932541.1 recombinase RecA Machinery gene
  SMWW4_RS04200 (SMWW4_v1c08260) recX 926816..927328 (+) 513 WP_015376701.1 recombination regulator RecX -
  SMWW4_RS04205 (SMWW4_v1c08270) alaS 927462..930089 (+) 2628 WP_015376702.1 alanine--tRNA ligase -
  SMWW4_RS04210 (SMWW4_v1c08280) csrA 930342..930527 (+) 186 WP_004091602.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37909.34 Da        Isoelectric Point: 4.8181

>NTDB_id=55866 SMWW4_RS04195 WP_004932541.1 925691..926755(+) (recA) [Serratia marcescens WW4]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGEKIGQGKANACNFLKENPAIAAEL
DKKLRDLLLHSGGELVAASGDDFEDDEAETSEQF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=55866 SMWW4_RS04195 WP_004932541.1 925691..926755(+) (recA) [Serratia marcescens WW4]
ATGGCTATTGATGAGAACAAGCAAAAGGCGTTAGCTGCGGCACTGGGCCAGATTGAGAAACAGTTCGGCAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCCATGGACGTGGAAACGATCTCCACCGGCTCACTGTCACTCGATATCGCCCTGGGCG
CCGGCGGCCTGCCGATGGGCCGCATCGTAGAAATCTACGGCCCGGAATCGTCCGGTAAAACCACTTTGACGCTGCAGGTG
ATCGCCGCTGCGCAGCGCGAAGGCAAAACCTGTGCGTTCATCGACGCCGAACACGCGCTGGATCCTATCTATGCGAAAAA
GCTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCTGTGATGCGCTGA
CCCGCTCCGGCGCGGTTGATGTCATCATCGTCGACTCCGTGGCGGCGCTGACGCCGAAGGCGGAAATCGAAGGTGAAATC
GGCGATTCGCACATGGGCCTGGCGGCGCGCATGATGAGCCAGGCGATGCGTAAACTGGCCGGCAACCTGAAAAACGCCAA
TACCCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGCAACCCGGAAACCACGACCGGCGGTA
ACGCCCTGAAGTTCTATGCTTCGGTGCGTCTGGATATCCGTCGTATCGGCGCCATCAAAGAAGGCGACGAAGTGGTGGGC
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTCAAACAGGCTGAGTTCCAAATCATGTACGGCGA
AGGCATCAACAGCCGCGGCGAACTGGTCGATCTGGGCGTGAAGCACAAGATGATCGAAAAAGCTGGCGCCTGGTACAGCT
ATAACGGCGAGAAGATTGGTCAGGGCAAGGCGAATGCCTGTAACTTCCTGAAAGAAAACCCGGCTATTGCCGCCGAGCTG
GATAAGAAACTGCGCGACCTGCTGCTGCATAGCGGCGGTGAACTGGTAGCCGCTTCCGGTGACGACTTCGAAGACGACGA
AGCGGAAACCAGCGAGCAGTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.237

97.74

0.814
  recA Vibrio cholerae strain A1552

83.237

97.74

0.814
  recA Pseudomonas stutzeri DSM 10701

72.674

97.175

0.706
  recA Acinetobacter baumannii D1279779

70.64

97.175

0.686
  recA Glaesserella parasuis strain SC1401

69.253

98.305

0.681
  recA Acinetobacter baylyi ADP1

70.262

96.893

0.681
  recA Neisseria gonorrhoeae MS11

68.712

92.09

0.633
  recA Neisseria gonorrhoeae MS11

68.712

92.09

0.633
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.09

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.853

0.619
  recA Streptococcus pneumoniae Rx1

60.571

98.87

0.599
  recA Streptococcus pneumoniae TIGR4

60.571

98.87

0.599
  recA Streptococcus pneumoniae R6

60.571

98.87

0.599
  recA Streptococcus pneumoniae D39

60.571

98.87

0.599
  recA Streptococcus mitis NCTC 12261

61.471

96.045

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.057

98.305

0.59
  recA Helicobacter pylori strain NCTC11637

62.691

92.373

0.579
  recA Streptococcus mitis SK321

63.158

91.243

0.576
  recA Helicobacter pylori 26695

62.385

92.373

0.576
  recA Streptococcus mutans UA159

62.462

91.808

0.573
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.678

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.808

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

92.09

0.545

Multiple sequence alignment