Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KCG51_RS07025 Genome accession   NZ_CP073119
Coordinates   1466831..1467877 (+) Length   348 a.a.
NCBI ID   WP_049322198.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1461831..1472877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS07010 (KCG51_07030) - 1463035..1463640 (+) 606 WP_250580177.1 CoA pyrophosphatase -
  KCG51_RS07015 (KCG51_07035) cysG 1463694..1465090 (-) 1397 Protein_1353 siroheme synthase CysG -
  KCG51_RS07020 (KCG51_07040) aroA 1465391..1466683 (+) 1293 WP_250580181.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  KCG51_RS07025 (KCG51_07045) recA 1466831..1467877 (+) 1047 WP_049322198.1 recombinase RecA Machinery gene
  KCG51_RS07030 (KCG51_07050) fghA 1467973..1468821 (-) 849 WP_250580183.1 S-formylglutathione hydrolase -
  KCG51_RS07035 (KCG51_07055) - 1469318..1471030 (+) 1713 WP_250580184.1 proline--tRNA ligase -
  KCG51_RS07040 (KCG51_07060) pflA 1471097..1471903 (-) 807 WP_250580187.1 pyruvate formate lyase 1-activating protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37589.88 Da        Isoelectric Point: 4.8967

>NTDB_id=558169 KCG51_RS07025 WP_049322198.1 1466831..1467877(+) (recA) [Neisseria subflava strain HP0069]
MSDEKSKALAAALAQIEKNFGKGSIMKMDGSQQEENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAI
AQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGN
ETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAKIGQGKDNVRVWLKENPDVANEID
AKIRAAVGINVDITEGKLDDTDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=558169 KCG51_RS07025 WP_049322198.1 1466831..1467877(+) (recA) [Neisseria subflava strain HP0069]
ATGTCAGACGAAAAAAGCAAAGCCTTAGCCGCCGCCCTTGCCCAAATCGAAAAGAACTTCGGCAAAGGCTCCATCATGAA
AATGGACGGCAGCCAACAGGAAGAAAACCTTGATGTTATTTCCACCGGCTCCCTCGGCGTGGACTTGGCACTCGGCGTTG
GCGGTCTGCCCCGCGGCCGCGTGGTTGAAATTTTCGGCCCGGAATCCTCCGGTAAAACCACACTCTGTCTCGAAGCCATT
GCCCAATGCCAAAAAAATGGCGGCATCTGCGCATTCATCGATGCCGAGCATGCTTTTGACCCGATTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAACTCTATCTCTCCCAACCGGATACCGGCGAACAGGCATTGGAAATCTGCGATACATTGGTGC
GCTCAGGCGGTATCGATATGGTCGTTGTTGACTCCGTAGCCGCACTTGTGCCTAAAGCCGAGATCGAAGGCGAAATGGGC
GACAGCCACGTCGGCCTGCAAGCCCGTCTGATGAGCCAAGCCTTACGCAAACTGACCGGCCACATCAAACGCACCAATAC
ATTAGTTGTTTTCATTAACCAAATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCTGAAACCACGACCGGTGGTAACG
CGCTCAAATTCTACGCCTCCGTCCGCCTCGATATCCGCCGTACCGGTCAGATTAAAAAAGGCGATGACGTCATTGGTAAC
GAAACCAAAGTCAAAGTCATCAAAAACAAAGTTGCGCCTCCATTCCGTCAAGCCGAATTCGATATTCTTTACGGCGAAGG
TATCAGCTGGGAAGGCGAATTGATCGACTTGGGCGTCAAACACGACATCGTTGAAAAATCCGGTGCATGGTACAGCTACA
ACGGCGCAAAAATCGGCCAAGGCAAAGACAATGTACGCGTTTGGCTGAAAGAAAATCCCGATGTTGCCAACGAAATTGAT
GCCAAAATCCGTGCGGCAGTCGGTATCAATGTCGATATCACCGAAGGCAAATTGGACGACACCGACGGCGAACGTCCTGA
GGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

89.943

100

0.899
  recA Neisseria gonorrhoeae strain FA1090

89.943

100

0.899
  recA Neisseria gonorrhoeae MS11

89.943

100

0.899
  recA Ralstonia pseudosolanacearum GMI1000

76.364

94.828

0.724
  recA Pseudomonas stutzeri DSM 10701

71.385

93.391

0.667
  recA Acinetobacter baylyi ADP1

71.605

93.103

0.667
  recA Vibrio cholerae strain A1552

70.679

93.103

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.679

93.103

0.658
  recA Glaesserella parasuis strain SC1401

69.817

94.253

0.658
  recA Acinetobacter baumannii D1279779

70.062

93.103

0.652
  recA Helicobacter pylori 26695

65.569

95.977

0.629
  recA Helicobacter pylori strain NCTC11637

65.569

95.977

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

94.253

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.758

94.828

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

65.758

94.828

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

61.808

98.563

0.609
  recA Streptococcus mutans UA159

58.974

100

0.595
  recA Streptococcus pneumoniae D39

58.908

100

0.589
  recA Streptococcus pneumoniae Rx1

58.908

100

0.589
  recA Streptococcus pneumoniae R6

58.908

100

0.589
  recA Streptococcus pneumoniae TIGR4

58.908

100

0.589
  recA Streptococcus mitis NCTC 12261

59.302

98.851

0.586
  recA Lactococcus lactis subsp. cremoris KW2

61.515

94.828

0.583
  recA Streptococcus pyogenes NZ131

61.212

94.828

0.58
  recA Streptococcus mitis SK321

60.909

94.828

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.939

93.966

0.563