Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KCX70_RS15765 Genome accession   NZ_CP073105
Coordinates   3418575..3419618 (-) Length   347 a.a.
NCBI ID   WP_212618100.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain F2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3413575..3424618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX70_RS15750 (KCX70_15750) - 3415322..3416722 (+) 1401 WP_212618097.1 MBL fold metallo-hydrolase -
  KCX70_RS15755 (KCX70_15755) - 3416956..3418029 (+) 1074 WP_212618098.1 LOG family protein -
  KCX70_RS15760 (KCX70_15760) recX 3418105..3418569 (-) 465 WP_212618099.1 recombination regulator RecX -
  KCX70_RS15765 (KCX70_15765) recA 3418575..3419618 (-) 1044 WP_212618100.1 recombinase RecA Machinery gene
  KCX70_RS15770 (KCX70_15770) - 3419703..3420203 (-) 501 WP_212618101.1 CinA family protein -
  KCX70_RS15775 (KCX70_15775) - 3420289..3420714 (-) 426 WP_212620361.1 potassium channel family protein -
  KCX70_RS23480 - 3422137..3422337 (+) 201 Protein_3111 DUF3987 domain-containing protein -
  KCX70_RS15780 (KCX70_15780) - 3422454..3423392 (+) 939 WP_336512524.1 DUF3987 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37103.52 Da        Isoelectric Point: 5.8780

>NTDB_id=557956 KCX70_RS15765 WP_212618100.1 3418575..3419618(-) (recA) [Stutzerimonas stutzeri strain F2]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTMTLSVIA
EAQKAGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
THVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQQGLVEKSGAWYAYKGNKIGQGKANAAKFLEENPEIGREIEQ
QIRDKLLVVSANTKANPVAQDLAEADL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=557956 KCX70_RS15765 WP_212618100.1 3418575..3419618(-) (recA) [Stutzerimonas stutzeri strain F2]
ATGGACGAGAACAAGAAGCGCGCCTTGGCTGCCGCCTTGGGCCAGATCGAAAAGCAGTTCGGTAAGGGCGCGGTCATGCG
CATGGGCGATCACGATCGCCAGGCGATTCCCTCCATTTCCACCGGCTCGCTGGGCCTGGATATCGCGCTCGGCATCGGCG
GTCTGCCTAAGGGCCGAATCGTCGAGATCTACGGTCCGGAATCGTCCGGTAAGACGACCATGACGCTGTCGGTGATTGCC
GAGGCGCAAAAGGCTGGCGCTACCTGTGCCTTCGTCGATGCCGAGCATGCGTTGGATCCCGATTACGCCGGCAAGCTGGG
CGTCAATGTCGACGATCTGCTGGTGTCGCAGCCGGATACCGGCGAGCAGGCACTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCAGTCGACGTGATCATCGTTGACTCCGTAGCGGCACTGGTGCCGAAAGCGGAAATCGAAGGCGAGATGGGCGAT
ACCCATGTTGGCCTGCAGGCTCGTCTGATGTCCCAGGCGTTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATTTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAGCCCGGAAACGACTACTGGCGGTAACGCGC
TCAAGTTCTACGCCTCGGTTCGTCTCGACATTCGTCGTACCGGTGCGGTGAAGGAAGGCGACGAGGTGGTCGGTAGCGAA
ACGCGGGTCAAGGTCGTCAAGAACAAGGTGGCGCCACCGTTCCGTCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAACGGTGAGGTCATCGACCTTGGCGTGCAACAGGGCCTGGTGGAGAAGTCTGGCGCCTGGTACGCCTACAAAG
GCAACAAGATCGGTCAGGGCAAGGCCAATGCGGCCAAGTTCCTGGAAGAGAACCCGGAAATCGGTCGTGAAATCGAGCAG
CAGATTCGGGACAAGCTGCTGGTGGTGTCGGCGAACACCAAGGCCAACCCGGTTGCTCAAGATCTGGCCGAAGCCGATCT
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

95.389

100

0.954
  recA Acinetobacter baylyi ADP1

76.119

96.542

0.735
  recA Acinetobacter baumannii D1279779

75.904

95.677

0.726
  recA Vibrio cholerae strain A1552

74.618

94.236

0.703
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.618

94.236

0.703
  recA Glaesserella parasuis strain SC1401

74.074

93.372

0.692
  recA Ralstonia pseudosolanacearum GMI1000

72.561

94.524

0.686
  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669
  recA Neisseria gonorrhoeae MS11

71.605

93.372

0.669
  recA Neisseria gonorrhoeae strain FA1090

71.605

93.372

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

94.236

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.377

96.254

0.591
  recA Helicobacter pylori strain NCTC11637

62.385

94.236

0.588
  recA Helicobacter pylori 26695

62.385

94.236

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus mitis SK321

56.977

99.135

0.565
  recA Streptococcus mitis NCTC 12261

56.358

99.712

0.562
  recA Streptococcus pneumoniae R6

59.509

93.948

0.559
  recA Streptococcus pneumoniae D39

59.509

93.948

0.559
  recA Streptococcus pneumoniae TIGR4

59.509

93.948

0.559
  recA Streptococcus pneumoniae Rx1

59.509

93.948

0.559
  recA Streptococcus mutans UA159

59.692

93.66

0.559
  recA Streptococcus pyogenes NZ131

57.927

94.524

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.507

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.585

93.084

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

93.948

0.527