Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J8N07_RS12080 Genome accession   NZ_CP073074
Coordinates   2698121..2699125 (+) Length   334 a.a.
NCBI ID   WP_047097753.1    Uniprot ID   A0A1B8ZUJ4
Organism   Chryseobacterium arthrosphaerae strain LMY     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2693121..2704125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8N07_RS12060 (J8N07_12060) gap 2693209..2694213 (+) 1005 WP_065399227.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  J8N07_RS12065 (J8N07_12065) - 2694286..2695245 (-) 960 WP_229049319.1 hypothetical protein -
  J8N07_RS12070 (J8N07_12070) - 2695445..2696629 (+) 1185 WP_229049320.1 oxygenase MpaB family protein -
  J8N07_RS12075 (J8N07_12075) - 2696669..2697862 (-) 1194 WP_229049321.1 hypothetical protein -
  J8N07_RS12080 (J8N07_12080) recA 2698121..2699125 (+) 1005 WP_047097753.1 recombinase RecA Machinery gene
  J8N07_RS12085 (J8N07_12085) - 2699509..2700960 (-) 1452 WP_229049322.1 hypothetical protein -
  J8N07_RS12090 (J8N07_12090) - 2701117..2704017 (-) 2901 WP_229049323.1 prolyl oligopeptidase family serine peptidase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35983.33 Da        Isoelectric Point: 5.3469

>NTDB_id=557703 J8N07_RS12080 WP_047097753.1 2698121..2699125(+) (recA) [Chryseobacterium arthrosphaerae strain LMY]
MSNIDDKKKALALVLDKLDKTYGKGTVMTLGDESIDNTVEVIPSGSLGLDIALGIGGYPKGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKVGEILDTAVDMGIVKKSGSWFSYEESKLGQGRDAVKDVLKDNPELAE
ELENKIKEEMKNNK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=557703 J8N07_RS12080 WP_047097753.1 2698121..2699125(+) (recA) [Chryseobacterium arthrosphaerae strain LMY]
ATGAGTAACATTGATGATAAGAAAAAAGCACTCGCATTAGTGCTTGACAAGCTAGATAAAACATATGGAAAGGGAACTGT
AATGACTTTAGGTGATGAATCTATAGACAATACGGTAGAAGTAATTCCTTCAGGTTCTTTAGGATTAGATATCGCACTAG
GTATTGGCGGATATCCAAAAGGAAGAATCATTGAAATATATGGACCTGAATCTTCTGGTAAAACAACTTTGACCCTTCAC
GCTATTGCTGAAGCTCAGAAAGCCGGCGGTATTGCTGCATTTATTGATGCTGAGCACGCTTTCGACAGAACGTATGCAGC
GAAATTAGGAATCGATCTTGAAAACCTTATTATTTCTCAGCCGGACAACGGTGAGCAGGCTCTGGAGATCGCTGATAACC
TGATCCGTTCAGGAGCCATCGATATCGTAGTGATTGACTCTGTAGCGGCTCTTACACCAAAAGCGGAAATTGAAGGTGAA
ATGGGAGACTCCAAAATGGGTCTTCACGCAAGATTGATGTCTCAGGCATTAAGAAAACTTACAGCTACCATTTCAAGAAC
AAAATGTACGGTAATTTTCATCAACCAGTTGAGAGAGAAGATCGGAGTAATGTTCGGTAATCCTGAAACCACTACCGGAG
GTAATGCTCTTAAATTCTACGCTTCGGTAAGAATCGATATCAGAAAAGCAAGTGCACCGATCAAGCAGGGTGATGAAGCG
ATCGGTAGCCGTGTAAAAGTGAAGATTGTGAAAAACAAAGTAGCTCCGCCTTTCAAACAGGCAGAATTCGACATCATGTA
TGGTGAAGGTGTTTCTAAAGTAGGAGAAATTCTTGATACAGCGGTTGATATGGGAATTGTGAAGAAGAGCGGTTCCTGGT
TCAGCTATGAAGAATCTAAATTAGGTCAGGGACGTGATGCTGTAAAAGATGTTTTAAAAGACAATCCTGAACTTGCTGAG
GAATTGGAAAACAAGATCAAAGAGGAAATGAAAAACAACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8ZUJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.06

99.102

0.793
  recA Acinetobacter baylyi ADP1

65.031

97.605

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

97.904

0.635
  recA Acinetobacter baumannii D1279779

64.724

97.605

0.632
  recA Glaesserella parasuis strain SC1401

63.636

98.802

0.629
  recA Helicobacter pylori strain NCTC11637

62.84

99.102

0.623
  recA Helicobacter pylori 26695

62.84

99.102

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

62.048

99.401

0.617
  recA Ralstonia pseudosolanacearum GMI1000

65.495

93.713

0.614
  recA Neisseria gonorrhoeae MS11

62.539

96.707

0.605
  recA Neisseria gonorrhoeae strain FA1090

62.539

96.707

0.605
  recA Neisseria gonorrhoeae MS11

62.539

96.707

0.605
  recA Streptococcus pyogenes NZ131

61.468

97.904

0.602
  recA Streptococcus mitis SK321

61.656

97.605

0.602
  recA Streptococcus mitis NCTC 12261

61.656

97.605

0.602
  recA Pseudomonas stutzeri DSM 10701

61.35

97.605

0.599
  recA Vibrio cholerae strain A1552

60.182

98.503

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.182

98.503

0.593
  recA Streptococcus mutans UA159

60.55

97.904

0.593
  recA Lactococcus lactis subsp. cremoris KW2

60.429

97.605

0.59
  recA Streptococcus pneumoniae Rx1

60.308

97.305

0.587
  recA Streptococcus pneumoniae D39

60.308

97.305

0.587
  recA Streptococcus pneumoniae TIGR4

60.308

97.305

0.587
  recA Streptococcus pneumoniae R6

60.308

97.305

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

59.133

96.707

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.055

97.605

0.557