Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KBW87_RS05625 Genome accession   NZ_CP072983
Coordinates   1208454..1209536 (-) Length   360 a.a.
NCBI ID   WP_057810714.1    Uniprot ID   -
Organism   Lactobacillus intestinalis strain DSM 6629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1203454..1214536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBW87_RS05610 (KBW87_05630) - 1204755..1205417 (+) 663 WP_057810718.1 YigZ family protein -
  KBW87_RS05615 (KBW87_05635) - 1205440..1206603 (-) 1164 WP_004045103.1 glycosyltransferase family 4 protein -
  KBW87_RS05620 (KBW87_05640) rny 1206709..1208340 (-) 1632 WP_057810716.1 ribonuclease Y -
  KBW87_RS05625 (KBW87_05645) recA 1208454..1209536 (-) 1083 WP_057810714.1 recombinase RecA Machinery gene
  KBW87_RS05630 (KBW87_05650) - 1209685..1211256 (-) 1572 WP_057810712.1 peptide chain release factor 3 -
  KBW87_RS05635 (KBW87_05655) - 1211256..1212125 (-) 870 WP_057810710.1 hemolysin family protein -
  KBW87_RS05640 (KBW87_05660) - 1212237..1212698 (+) 462 WP_004045115.1 hypothetical protein -
  KBW87_RS05645 (KBW87_05665) - 1212699..1213181 (-) 483 WP_057810708.1 hypothetical protein -
  KBW87_RS05650 (KBW87_05670) recX 1213194..1214009 (-) 816 WP_057810706.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38963.40 Da        Isoelectric Point: 6.3256

>NTDB_id=557138 KBW87_RS05625 WP_057810714.1 1208454..1209536(-) (recA) [Lactobacillus intestinalis strain DSM 6629]
MAKDEKKAALDAALKKIEKNFGKGAVMRMGEKVDTQISTVPTGSIALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDIVVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGTISKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSGDVIGN
RVKLKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAAEKDIIDKAGSWYSYKDEKIGQGRENAKKFLEEHPDIYKDVQ
TQVRQSFGIDADSIADREDPEKVKEKREETQNNADKKDKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=557138 KBW87_RS05625 WP_057810714.1 1208454..1209536(-) (recA) [Lactobacillus intestinalis strain DSM 6629]
TTGGCCAAAGACGAAAAAAAGGCTGCCTTGGATGCAGCTCTTAAGAAAATAGAGAAGAACTTTGGTAAAGGTGCAGTTAT
GCGAATGGGTGAAAAGGTAGATACTCAAATCTCAACTGTACCTACAGGTTCTATTGCTTTGGATGCGGCACTTGGTGTGG
GTGGATATCCACGTGGTCGAATTGTAGAAATTTACGGACCTGAATCTTCCGGTAAAACTACTGTGGCGTTACATGCAGTT
GCAGAAGTTCAAAAGCGAGGCGGTACAGCTGCTTATATTGATGCAGAAAATGCGATGGACCCAGCATATGCCGAAGCTTT
AGGGGTGGACATTGATTCACTTATTTTGTCACAGCCTAATACTGGAGAAGAAGGTTTGCAAATTGCAGATACTTTAATTT
CTAGTGGAGCCATTGATATTGTGGTTGTTGACTCTGTAGCTGCCTTGGTTCCACGTGCTGAAATCGAAGGCGATATGGGG
GATGCACACGTTGGTTTGCAAGCTCGGTTGATGAGTCAAGCTCTTCGTAAGTTATCTGGAACAATTTCAAAGACTAAAAC
TATCGCACTCTTTATCAACCAAATTCGTGAAAAAGTCGGTGTGATGTTTGGTAATCCAGAAACTACCCCTGGAGGTCGTG
CACTTAAGTTCTATTCAACTATTAGACTTGAAGTTAGACGTGCAGAACAAATTAAGCAATCCGGGGATGTGATTGGTAAC
CGTGTAAAACTTAAGGTTGTTAAGAACAAGGTTGCGCCTCCATTTAAAGTTGCCGAAGTGGATATTATGTATGGTAAAGG
AATTTCTCAAAGTGGAGAATTGCTTGATATGGCAGCTGAAAAAGATATTATTGATAAAGCTGGCTCATGGTATTCATACA
AAGACGAAAAGATCGGCCAAGGTCGTGAAAATGCCAAGAAATTCTTGGAAGAACATCCCGATATTTATAAAGATGTTCAG
ACACAAGTTCGTCAAAGCTTTGGAATCGATGCAGACTCAATTGCAGATCGTGAAGATCCTGAAAAAGTAAAAGAAAAGCG
TGAGGAAACCCAAAATAACGCTGACAAAAAAGATAAGAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.067

91.389

0.75
  recA Bacillus subtilis subsp. subtilis str. 168

72.121

91.667

0.661
  recA Streptococcus mutans UA159

66.106

99.167

0.656
  recA Streptococcus pneumoniae R6

66.384

98.333

0.653
  recA Streptococcus pneumoniae TIGR4

66.384

98.333

0.653
  recA Streptococcus pneumoniae Rx1

66.384

98.333

0.653
  recA Streptococcus pneumoniae D39

66.384

98.333

0.653
  recA Streptococcus mitis NCTC 12261

67.251

95

0.639
  recA Streptococcus mitis SK321

66.667

95

0.633
  recA Streptococcus pyogenes NZ131

68.693

91.389

0.628
  recA Lactococcus lactis subsp. cremoris KW2

66.066

92.5

0.611
  recA Neisseria gonorrhoeae MS11

59.249

96.111

0.569
  recA Neisseria gonorrhoeae MS11

59.249

96.111

0.569
  recA Neisseria gonorrhoeae strain FA1090

59.249

96.111

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.212

91.667

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.997

94.167

0.556
  recA Acinetobacter baumannii D1279779

56.772

96.389

0.547
  recA Glaesserella parasuis strain SC1401

54.986

97.5

0.536
  recA Helicobacter pylori 26695

56.14

95

0.533
  recA Helicobacter pylori strain NCTC11637

56.14

95

0.533
  recA Acinetobacter baylyi ADP1

58.951

90

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

88.889

0.528
  recA Pseudomonas stutzeri DSM 10701

58.567

89.167

0.522
  recA Ralstonia pseudosolanacearum GMI1000

59.105

86.944

0.514
  recA Vibrio cholerae O1 biovar El Tor strain E7946

56.211

89.444

0.503
  recA Vibrio cholerae strain A1552

56.211

89.444

0.503