Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KAQ61_RS16055 Genome accession   NZ_CP072916
Coordinates   3411954..3413066 (+) Length   370 a.a.
NCBI ID   WP_042415972.1    Uniprot ID   A0A014MIU6
Organism   Comamonas aquatica strain NEB418     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3406954..3418066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAQ61_RS16035 (KAQ61_16035) - 3407892..3408878 (+) 987 WP_154163118.1 LysR substrate-binding domain-containing protein -
  KAQ61_RS16040 (KAQ61_16040) - 3408901..3410373 (-) 1473 WP_210929803.1 sensor histidine kinase N-terminal domain-containing protein -
  KAQ61_RS16045 (KAQ61_16045) - 3410443..3411117 (-) 675 WP_042415966.1 response regulator -
  KAQ61_RS16050 (KAQ61_16050) - 3411310..3411813 (-) 504 WP_210929804.1 MarR family winged helix-turn-helix transcriptional regulator -
  KAQ61_RS16055 (KAQ61_16055) recA 3411954..3413066 (+) 1113 WP_042415972.1 recombinase RecA Machinery gene
  KAQ61_RS16060 (KAQ61_16060) recX 3413143..3413604 (+) 462 WP_043378583.1 recombination regulator RecX -
  KAQ61_RS16065 (KAQ61_16065) - 3413665..3414909 (-) 1245 WP_210929805.1 MgtC/SapB family protein -
  KAQ61_RS16070 (KAQ61_16070) yddG 3414996..3415922 (-) 927 WP_210929806.1 aromatic amino acid DMT transporter YddG -
  KAQ61_RS16075 (KAQ61_16075) argC 3416089..3417021 (-) 933 WP_210929807.1 N-acetyl-gamma-glutamyl-phosphate reductase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39180.97 Da        Isoelectric Point: 5.0958

>NTDB_id=556875 KAQ61_RS16055 WP_042415972.1 3411954..3413066(+) (recA) [Comamonas aquatica strain NEB418]
MNAIARNTDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAVEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALVP
KAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDNAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMAVEAKLLEKSGAWYAYNGEKIGQGRDNAREFLKE
NPALAVEIENKVRESLGISLIPVAEGEAAAKPAKGKKADKAVADEDGVIG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=556875 KAQ61_RS16055 WP_042415972.1 3411954..3413066(+) (recA) [Comamonas aquatica strain NEB418]
ATGAACGCCATCGCCCGCAACACCGACGCCAACAGCGAAAAAGCCAAGGCCCTGGCCGCCGCCCTGGCCCAGATCGAAAA
GCAGTTTGGCAAGGGCACCATCATGAAGCTGGGCGAGGGCGAGGCCGTGGAGGACATCCAGGTTGTGTCCACCGGCTCGC
TGGGCCTGGACGTGGCTCTGGGCGTGGGCGGCCTGCCCCGCGGTCGTGTGATCGAGATCTACGGCCCCGAGTCGTCCGGC
AAGACCACGCTGACCCTGCAGGTCGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGC
GCTGGACACCAGCTATGCCCAGAAGCTGGGCGTGAACCTGAACGAGGTGCTGATCAGCCAGCCCGACACCGGCGAGCAGG
CCCTGGAAATCGTCGACAGCCTGGTGCGCTCCGGCGCCGTGGACCTGATCGTCGTCGACTCGGTGGCCGCCCTGGTGCCC
AAGGCCGAAATCGAAGGCGAAATGGGCGACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGCGACCATCAAGAAGACCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCACCATC
AAGAAGGGCGACAACGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCCCCGTTCAAGACGGC
CGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCCTGGACATGGCCGTGGAAGCCAAGCTGCTGG
AAAAGTCCGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACGCCCGCGAGTTCCTGAAGGAA
AACCCCGCGCTGGCCGTGGAAATCGAGAACAAGGTGCGCGAGAGCCTGGGCATCAGCCTGATCCCCGTGGCCGAAGGCGA
AGCCGCCGCCAAGCCCGCCAAGGGCAAGAAGGCCGACAAGGCCGTGGCCGATGAAGACGGCGTGATCGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A014MIU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.81

85.135

0.714
  recA Pseudomonas stutzeri DSM 10701

68.696

93.243

0.641
  recA Neisseria gonorrhoeae MS11

70.909

89.189

0.632
  recA Neisseria gonorrhoeae MS11

70.909

89.189

0.632
  recA Neisseria gonorrhoeae strain FA1090

70.909

89.189

0.632
  recA Glaesserella parasuis strain SC1401

71.605

87.568

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.962

91.622

0.614
  recA Vibrio cholerae strain A1552

69.018

88.108

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.018

88.108

0.608
  recA Acinetobacter baylyi ADP1

69.018

88.108

0.608
  recA Acinetobacter baumannii D1279779

69.018

88.108

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.565

88.919

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

88.378

0.576
  recA Helicobacter pylori strain NCTC11637

64.939

88.649

0.576
  recA Helicobacter pylori 26695

64.939

88.649

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

90

0.568
  recA Lactococcus lactis subsp. cremoris KW2

63.444

89.459

0.568
  recA Streptococcus mutans UA159

59.207

95.405

0.565
  recA Streptococcus mitis SK321

59.942

93.784

0.562
  recA Streptococcus pyogenes NZ131

62.614

88.919

0.557
  recA Streptococcus pneumoniae R6

61.631

89.459

0.551
  recA Streptococcus pneumoniae Rx1

61.631

89.459

0.551
  recA Streptococcus pneumoniae D39

61.631

89.459

0.551
  recA Streptococcus pneumoniae TIGR4

61.631

89.459

0.551
  recA Streptococcus mitis NCTC 12261

61.329

89.459

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

89.189

0.543