Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | J9870_RS06010 | Genome accession | NZ_CP072913 |
| Coordinates | 1364403..1365455 (+) | Length | 350 a.a. |
| NCBI ID | WP_003198351.1 | Uniprot ID | A0A1I5E008 |
| Organism | Pseudomonas sp. Tri1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1330926..1365931 | 1364403..1365455 | within | 0 |
Gene organization within MGE regions
Location: 1330926..1365931
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9870_RS05815 | mutS | 1330926..1333493 (-) | 2568 | WP_210643070.1 | DNA mismatch repair protein MutS | - |
| J9870_RS05820 | - | 1334232..1334588 (-) | 357 | WP_210643071.1 | DUF6124 family protein | - |
| J9870_RS05825 | - | 1335342..1336076 (+) | 735 | WP_210645117.1 | XRE family transcriptional regulator | - |
| J9870_RS05830 | - | 1336588..1337007 (+) | 420 | WP_210643072.1 | tail fiber assembly protein | - |
| J9870_RS05835 | - | 1337098..1337448 (+) | 351 | WP_123342521.1 | phage holin family protein | - |
| J9870_RS05840 | - | 1337485..1337997 (+) | 513 | WP_210643073.1 | hypothetical protein | - |
| J9870_RS05845 | - | 1338001..1338612 (+) | 612 | WP_210643074.1 | phage baseplate assembly protein V | - |
| J9870_RS05850 | - | 1338623..1338955 (+) | 333 | WP_210643075.1 | phage baseplate protein | - |
| J9870_RS05855 | - | 1338952..1339947 (+) | 996 | WP_210643076.1 | baseplate J/gp47 family protein | - |
| J9870_RS05860 | - | 1339944..1340579 (+) | 636 | WP_210643077.1 | phage tail protein I | - |
| J9870_RS29410 | - | 1340580..1342691 (+) | 2112 | WP_246883080.1 | phage tail protein | - |
| J9870_RS05870 | - | 1342702..1343106 (+) | 405 | WP_246883081.1 | phage tail assembly chaperone | - |
| J9870_RS05875 | - | 1343196..1343405 (+) | 210 | WP_210643079.1 | hypothetical protein | - |
| J9870_RS05880 | - | 1343408..1344574 (+) | 1167 | WP_072387869.1 | phage tail protein | - |
| J9870_RS05885 | - | 1344574..1345080 (+) | 507 | WP_135843954.1 | phage major tail tube protein | - |
| J9870_RS05890 | - | 1345264..1345830 (+) | 567 | WP_210643080.1 | phage tail assembly protein | - |
| J9870_RS05895 | - | 1345959..1348016 (+) | 2058 | WP_210643081.1 | phage tail tape measure protein | - |
| J9870_RS05900 | - | 1348016..1348399 (+) | 384 | WP_210643082.1 | phage tail protein | - |
| J9870_RS05905 | - | 1348392..1348604 (+) | 213 | WP_210643083.1 | tail protein X | - |
| J9870_RS05910 | - | 1348614..1349630 (+) | 1017 | WP_210643084.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| J9870_RS05915 | - | 1349790..1350356 (+) | 567 | WP_210643085.1 | hypothetical protein | - |
| J9870_RS05920 | - | 1350353..1350535 (+) | 183 | WP_039594435.1 | DUF2635 domain-containing protein | - |
| J9870_RS05925 | - | 1350535..1352031 (+) | 1497 | WP_210643086.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| J9870_RS05930 | - | 1352098..1352445 (+) | 348 | WP_134923017.1 | phage tail tube protein | - |
| J9870_RS05935 | - | 1352442..1352738 (+) | 297 | WP_003198316.1 | phage tail assembly protein | - |
| J9870_RS05940 | - | 1352869..1354443 (+) | 1575 | WP_210643087.1 | phage tail protein | - |
| J9870_RS05945 | - | 1354430..1355668 (+) | 1239 | WP_210643088.1 | DNA circularization N-terminal domain-containing protein | - |
| J9870_RS05950 | - | 1355672..1356712 (+) | 1041 | WP_210643089.1 | phage baseplate assembly protein | - |
| J9870_RS05955 | - | 1356976..1357485 (+) | 510 | WP_210643090.1 | phage baseplate assembly protein | - |
| J9870_RS05960 | - | 1357485..1357883 (+) | 399 | WP_210643091.1 | phage GP46 family protein | - |
| J9870_RS05965 | - | 1357873..1358913 (+) | 1041 | WP_210643092.1 | baseplate J/gp47 family protein | - |
| J9870_RS05970 | - | 1358901..1359500 (+) | 600 | WP_210643093.1 | putative phage tail protein | - |
| J9870_RS05975 | - | 1359511..1360605 (+) | 1095 | WP_210643094.1 | phage tail protein | - |
| J9870_RS05980 | - | 1360613..1361173 (+) | 561 | WP_210643095.1 | tail fiber assembly protein | - |
| J9870_RS05985 | - | 1361285..1362196 (+) | 912 | WP_210643096.1 | phage tail protein | - |
| J9870_RS05990 | - | 1362204..1362644 (+) | 441 | WP_210643097.1 | phage tail assembly chaperone | - |
| J9870_RS05995 | - | 1362667..1363230 (+) | 564 | WP_210645119.1 | glycoside hydrolase family 19 protein | - |
| J9870_RS06000 | - | 1363212..1363748 (+) | 537 | WP_210643098.1 | lysis system i-spanin subunit Rz | - |
| J9870_RS06005 | - | 1363819..1364319 (+) | 501 | WP_210643099.1 | CinA family protein | - |
| J9870_RS06010 | recA | 1364403..1365455 (+) | 1053 | WP_003198351.1 | recombinase RecA | Machinery gene |
| J9870_RS06015 | recX | 1365464..1365931 (+) | 468 | WP_210643100.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37232.69 Da Isoelectric Point: 5.5226
>NTDB_id=556809 J9870_RS06010 WP_003198351.1 1364403..1365455(+) (recA) [Pseudomonas sp. Tri1]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKSVANRETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEVAAALEK
QLRDKLLSPVADVKSVANRETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=556809 J9870_RS06010 WP_003198351.1 1364403..1365455(+) (recA) [Pseudomonas sp. Tri1]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCACTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAGTCGTCCGGTAAAACCACATTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCTCTGGACCCGGAATACGCCGGTAAACTGGG
GGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGCCAGGCTGAGTTCCAGATTCTTTATGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAAAAATCCGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTTGCTGCGGCCCTCGAGAAG
CAATTGCGCGACAAGCTGCTGAGCCCAGTGGCAGACGTCAAGTCGGTGGCCAATCGCGAGACTGCAGACGACCTGGCTGA
CGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATCGCACTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAGTCGTCCGGTAAAACCACATTGACCTTGTCCGTGATCGCC
CAGGCCCAAAAAGCCGGCGCGACCTGCGCCTTCGTCGACGCCGAACACGCTCTGGACCCGGAATACGCCGGTAAACTGGG
GGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAATGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTACCCAAAGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCCTCCAGGCTCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGCCGTACTGGCGCGGTGAAAGAAGGTGATGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTTCGCCGTTCCGCCAGGCTGAGTTCCAGATTCTTTATGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAAAAATCCGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAGTTGCTGCGGCCCTCGAGAAG
CAATTGCGCGACAAGCTGCTGAGCCCAGTGGCAGACGTCAAGTCGGTGGCCAATCGCGAGACTGCAGACGACCTGGCTGA
CGCTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.