Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MYSTI_RS07270 Genome accession   NC_020126
Coordinates   1830147..1831175 (-) Length   342 a.a.
NCBI ID   WP_015347071.1    Uniprot ID   L7U8K5
Organism   Myxococcus stipitatus DSM 14675     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825147..1836175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYSTI_RS07250 (MYSTI_01457) pssA 1825858..1826715 (+) 858 WP_015347067.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MYSTI_RS07255 (MYSTI_01458) - 1826877..1828139 (+) 1263 WP_015347068.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MYSTI_RS07260 (MYSTI_01459) - 1828136..1829578 (+) 1443 WP_015347069.1 hypothetical protein -
  MYSTI_RS07265 (MYSTI_01460) - 1829637..1830146 (+) 510 WP_015347070.1 DUF1285 domain-containing protein -
  MYSTI_RS07270 (MYSTI_01461) recA 1830147..1831175 (-) 1029 WP_015347071.1 recombinase RecA Machinery gene
  MYSTI_RS07275 (MYSTI_01462) - 1831606..1832964 (+) 1359 WP_044279266.1 NAD(P)/FAD-dependent oxidoreductase -
  MYSTI_RS07280 (MYSTI_01463) - 1832919..1834607 (-) 1689 WP_015347073.1 YifB family Mg chelatase-like AAA ATPase -
  MYSTI_RS07285 (MYSTI_01464) - 1834881..1835471 (+) 591 WP_233278197.1 hypothetical protein -
  MYSTI_RS07290 (MYSTI_01465) - 1835372..1835995 (-) 624 WP_015347075.1 DUF2378 family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36083.43 Da        Isoelectric Point: 7.4790

>NTDB_id=55653 MYSTI_RS07270 WP_015347071.1 1830147..1831175(-) (recA) [Myxococcus stipitatus DSM 14675]
MSKLTEKLKAVAAAVASIEKQFGKGSVMTLGGDTREQKVAVIPSGSVGLDRALGVGGYPRGRVVEVFGNESSGKTTLTLH
AIAQVQAAGGVAAFIDAEHALDLSYARKLGVKVEELLVSQPDTGEQALEITEHLVRSGAVDLIIVDSVAALVPRAEIEGE
MGDAHMGVQARLMSQALRKLTGAVSRSGTCIVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEIRRTGNIKEGDSVV
GSRARVKVVKNKVAPPFQEAEFDLLYGSGVHRAGEVLDLGVAAGLIDKSGSHFSVRGERIGQGRERAVEWLREHPDTMEA
LARELAGAPPLPCPAVPMEAAA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=55653 MYSTI_RS07270 WP_015347071.1 1830147..1831175(-) (recA) [Myxococcus stipitatus DSM 14675]
ATGAGCAAGTTGACGGAGAAGCTGAAGGCAGTCGCGGCGGCGGTGGCGTCCATCGAGAAGCAGTTCGGGAAGGGCTCGGT
GATGACACTGGGAGGTGACACCCGCGAGCAGAAGGTCGCGGTGATTCCCTCGGGCTCGGTGGGACTGGACCGAGCGCTTG
GCGTGGGCGGCTATCCCCGCGGTCGCGTGGTGGAGGTGTTCGGCAACGAGTCGTCAGGCAAGACGACGCTCACGCTGCAT
GCGATTGCGCAGGTGCAGGCCGCCGGTGGGGTTGCGGCCTTCATCGATGCGGAGCACGCGCTCGACCTGTCCTATGCGCG
CAAGCTCGGTGTGAAGGTGGAGGAGCTCCTGGTGTCCCAGCCGGATACGGGAGAACAGGCCCTGGAGATCACGGAGCACC
TCGTTCGCTCCGGAGCCGTGGACCTCATCATCGTGGACTCGGTGGCGGCGCTGGTGCCTCGCGCGGAAATCGAGGGCGAG
ATGGGGGACGCGCACATGGGTGTTCAGGCCCGGTTGATGAGCCAGGCCCTGCGCAAGCTCACTGGCGCGGTGAGCCGCTC
GGGCACCTGCATCGTCTTCATCAATCAGATTCGAATGAAGATTGGCGTGATGTTCGGCAACCCGGAGACGACGACGGGCG
GCAACGCACTGAAGTTCTATTCCTCGGTGCGCCTGGAGATTCGTCGCACGGGGAACATCAAGGAGGGAGACAGTGTGGTG
GGCTCTCGAGCCCGCGTGAAGGTGGTGAAGAACAAGGTCGCCCCTCCGTTCCAGGAAGCCGAGTTCGACCTGCTGTACGG
CTCCGGAGTCCATCGCGCGGGCGAGGTGCTCGACCTGGGCGTGGCCGCGGGACTCATCGACAAGTCGGGGAGTCACTTCA
GCGTGCGCGGCGAGCGCATCGGACAGGGACGTGAGCGCGCCGTCGAGTGGCTGCGCGAACATCCCGACACCATGGAGGCA
CTGGCCCGGGAGCTGGCGGGTGCGCCTCCCCTTCCCTGCCCCGCCGTGCCCATGGAAGCCGCGGCCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L7U8K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

67.508

92.69

0.626
  recA Neisseria gonorrhoeae strain FA1090

65.538

95.029

0.623
  recA Neisseria gonorrhoeae MS11

65.538

95.029

0.623
  recA Neisseria gonorrhoeae MS11

65.538

95.029

0.623
  recA Pseudomonas stutzeri DSM 10701

65.312

93.567

0.611
  recA Acinetobacter baylyi ADP1

64.174

93.86

0.602
  recA Vibrio cholerae strain A1552

64.263

93.275

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.263

93.275

0.599
  recA Glaesserella parasuis strain SC1401

64.062

93.567

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

64.127

92.105

0.591
  recA Acinetobacter baumannii D1279779

62.696

93.275

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

59.403

97.953

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.059

93.86

0.573
  recA Helicobacter pylori strain NCTC11637

55.814

100

0.561
  recA Helicobacter pylori 26695

55.814

100

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.748

92.982

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.125

93.567

0.544
  recA Lactococcus lactis subsp. cremoris KW2

56.061

96.491

0.541
  recA Streptococcus pyogenes NZ131

57.099

94.737

0.541
  recA Streptococcus mutans UA159

57.5

93.567

0.538
  recA Streptococcus pneumoniae D39

56.173

94.737

0.532
  recA Streptococcus pneumoniae R6

56.173

94.737

0.532
  recA Streptococcus pneumoniae TIGR4

56.173

94.737

0.532
  recA Streptococcus pneumoniae Rx1

56.173

94.737

0.532
  recA Streptococcus mitis SK321

57.098

92.69

0.529
  recA Streptococcus mitis NCTC 12261

55.864

94.737

0.529

Multiple sequence alignment