Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | J9265_RS01525 | Genome accession | NZ_CP072847 |
| Coordinates | 303838..304902 (+) | Length | 354 a.a. |
| NCBI ID | WP_000344154.1 | Uniprot ID | A0A0K9UMZ1 |
| Organism | Vibrio cholerae strain A1552 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 248868..309928 | 303838..304902 | within | 0 |
Gene organization within MGE regions
Location: 248868..309928
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9265_RS01255 (J9265_01255) | - | 248868..250628 (-) | 1761 | Protein_210 | lysophospholipid acyltransferase family protein | - |
| J9265_RS01265 (J9265_01265) | - | 251388..253349 (-) | 1962 | WP_000466016.1 | DUF3732 domain-containing protein | - |
| J9265_RS01270 (J9265_01270) | - | 253350..253862 (-) | 513 | WP_000917213.1 | three component ABC system middle component | - |
| J9265_RS01275 (J9265_01275) | - | 253855..255021 (-) | 1167 | WP_000654528.1 | ABC-three component system protein | - |
| J9265_RS01280 (J9265_01280) | - | 255277..256152 (-) | 876 | WP_001139148.1 | MarR family transcriptional regulator | - |
| J9265_RS01285 (J9265_01285) | - | 256537..257181 (+) | 645 | WP_000042053.1 | inovirus Gp2 family protein | - |
| J9265_RS01290 (J9265_01290) | - | 257243..257917 (+) | 675 | WP_000149629.1 | inovirus Gp2 family protein | - |
| J9265_RS01295 (J9265_01295) | - | 257971..258570 (+) | 600 | WP_001883316.1 | inovirus Gp2 family protein | - |
| J9265_RS01300 (J9265_01300) | - | 258634..258834 (+) | 201 | WP_001211742.1 | AlpA family transcriptional regulator | - |
| J9265_RS01305 (J9265_01305) | - | 258916..259356 (+) | 441 | WP_000122383.1 | ribonuclease HI | - |
| J9265_RS01310 (J9265_01310) | - | 259437..260628 (-) | 1192 | Protein_220 | IS3 family transposase | - |
| J9265_RS01315 (J9265_01315) | - | 260943..262120 (+) | 1178 | WP_086010879.1 | IS3-like element ISVch4 family transposase | - |
| J9265_RS01320 (J9265_01320) | - | 262392..263302 (-) | 911 | Protein_222 | IS5-like element ISVch8 family transposase | - |
| J9265_RS01325 (J9265_01325) | - | 263691..264215 (-) | 525 | WP_000042161.1 | type II secretion system protein | - |
| J9265_RS01330 (J9265_01330) | - | 264489..264713 (-) | 225 | WP_306461095.1 | high-affinity zinc uptake system protein ZnuA precursor | - |
| J9265_RS01335 (J9265_01335) | - | 264911..266191 (+) | 1281 | WP_001883323.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| J9265_RS01340 (J9265_01340) | - | 266369..266596 (-) | 228 | WP_000749780.1 | hypothetical protein | - |
| J9265_RS01345 (J9265_01345) | - | 266644..267012 (-) | 369 | WP_000176666.1 | hypothetical protein | - |
| J9265_RS01350 (J9265_01350) | - | 267043..267777 (-) | 735 | WP_000066832.1 | WYL domain-containing protein | - |
| J9265_RS01355 (J9265_01355) | - | 268096..268539 (-) | 444 | WP_000041085.1 | DUF2787 domain-containing protein | - |
| J9265_RS01360 (J9265_01360) | - | 268589..269026 (-) | 438 | WP_000572499.1 | DUF2787 domain-containing protein | - |
| J9265_RS01365 (J9265_01365) | radC | 269023..269496 (-) | 474 | WP_001068472.1 | DNA repair protein RadC | - |
| J9265_RS01370 (J9265_01370) | - | 269808..271619 (+) | 1812 | WP_000110139.1 | DUF262 domain-containing protein | - |
| J9265_RS01375 (J9265_01375) | - | 271619..274084 (+) | 2466 | WP_000434811.1 | DUF262 domain-containing protein | - |
| J9265_RS01380 (J9265_01380) | - | 274451..276406 (+) | 1956 | WP_001143868.1 | hypothetical protein | - |
| J9265_RS01385 (J9265_01385) | - | 276713..277890 (+) | 1178 | WP_100068541.1 | IS3 family transposase | - |
| J9265_RS01390 (J9265_01390) | - | 277926..279167 (-) | 1242 | WP_001129565.1 | integrase domain-containing protein | - |
| J9265_RS01400 (J9265_01400) | rpoD | 279553..281430 (-) | 1878 | WP_000372618.1 | RNA polymerase sigma factor RpoD | - |
| J9265_RS01405 (J9265_01405) | dnaG | 281529..283292 (-) | 1764 | WP_000907210.1 | DNA primase | - |
| J9265_RS01410 (J9265_01410) | - | 283382..283825 (-) | 444 | WP_001173892.1 | GatB/YqeY domain-containing protein | - |
| J9265_RS01415 (J9265_01415) | rpsU | 283855..284070 (-) | 216 | WP_001145625.1 | 30S ribosomal protein S21 | - |
| J9265_RS01420 (J9265_01420) | tsaD | 284311..285330 (+) | 1020 | WP_001220122.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| J9265_RS01425 (J9265_01425) | - | 285484..286296 (+) | 813 | WP_001087495.1 | alpha/beta fold hydrolase | - |
| J9265_RS01430 (J9265_01430) | plsY | 286345..286971 (-) | 627 | WP_000188027.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| J9265_RS01435 (J9265_01435) | folB | 287160..287513 (+) | 354 | WP_000361954.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| J9265_RS01440 (J9265_01440) | folK | 287510..288016 (+) | 507 | WP_000627006.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| J9265_RS01445 (J9265_01445) | - | 288013..288816 (+) | 804 | WP_000119813.1 | undecaprenyl-diphosphate phosphatase | - |
| J9265_RS01450 (J9265_01450) | ftsB | 288931..289215 (+) | 285 | WP_001263189.1 | cell division protein FtsB | - |
| J9265_RS01455 (J9265_01455) | ispD | 289212..289910 (+) | 699 | WP_001061951.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| J9265_RS01460 (J9265_01460) | ispF | 289907..290383 (+) | 477 | WP_000619209.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| J9265_RS01465 (J9265_01465) | truD | 290413..291498 (+) | 1086 | WP_000129752.1 | tRNA pseudouridine(13) synthase TruD | - |
| J9265_RS01470 (J9265_01470) | surE | 291500..292252 (+) | 753 | WP_000698379.1 | 5'/3'-nucleotidase SurE | - |
| J9265_RS01475 (J9265_01475) | - | 292245..292871 (+) | 627 | WP_000002982.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| J9265_RS01480 (J9265_01480) | nlpD | 292871..293800 (+) | 930 | WP_053036405.1 | murein hydrolase activator NlpD | - |
| J9265_RS01485 (J9265_01485) | rpoS | 293874..294881 (+) | 1008 | WP_000116737.1 | RNA polymerase sigma factor RpoS | Regulator |
| J9265_RS01490 (J9265_01490) | mutS | 294974..297562 (-) | 2589 | WP_001894770.1 | DNA mismatch repair protein MutS | - |
| J9265_RS01495 (J9265_01495) | cysM | 297830..298717 (-) | 888 | WP_001279365.1 | cysteine synthase CysM | - |
| J9265_RS01500 (J9265_01500) | cysP | 299101..300102 (+) | 1002 | WP_001079835.1 | thiosulfate ABC transporter substrate-binding protein CysP | - |
| J9265_RS01505 (J9265_01505) | cysT | 300179..301030 (+) | 852 | WP_000531810.1 | sulfate/thiosulfate ABC transporter permease CysT | - |
| J9265_RS01510 (J9265_01510) | cysW | 301041..301904 (+) | 864 | WP_000951362.1 | sulfate ABC transporter permease subunit CysW | - |
| J9265_RS01515 (J9265_01515) | - | 301901..303031 (+) | 1131 | WP_000027776.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| J9265_RS01520 (J9265_01520) | pncC | 303198..303704 (+) | 507 | WP_000853811.1 | nicotinamide-nucleotide amidase | - |
| J9265_RS01525 (J9265_01525) | recA | 303838..304902 (+) | 1065 | WP_000344154.1 | recombinase RecA | Machinery gene |
| J9265_RS01530 (J9265_01530) | recX | 305035..305493 (+) | 459 | WP_000006855.1 | recombination regulator RecX | - |
| J9265_RS01535 (J9265_01535) | alaS | 305666..308248 (+) | 2583 | WP_000481017.1 | alanine--tRNA ligase | - |
| J9265_RS01540 (J9265_01540) | - | 308452..309639 (+) | 1188 | WP_001883372.1 | aspartate kinase | - |
| J9265_RS01545 (J9265_01545) | csrA | 309731..309928 (+) | 198 | WP_000906485.1 | carbon storage regulator CsrA | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 38249.92 Da Isoelectric Point: 5.0766
>NTDB_id=556256 J9265_RS01525 WP_000344154.1 303838..304902(+) (recA) [Vibrio cholerae strain A1552]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAETSSAADDVEFGAVPEEF
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAETSSAADDVEFGAVPEEF
Nucleotide
Download Length: 1065 bp
>NTDB_id=556256 J9265_RS01525 WP_000344154.1 303838..304902(+) (recA) [Vibrio cholerae strain A1552]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GTCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCACAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCACTGGATCCGGTTTATGCCAAAAAATTGGG
CGTGAATATCGATGAGCTACTGGTTTCTCAGCCAGATACCGGCGAGCAAGCACTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCTGTGGATGTCATCGTTGTTGACTCAGTAGCGGCTTTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCAATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACTACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCTGCGCCGTTTAAAGAAGCGAACACTCAGATCATGTATGGCCAAGGTTT
CAATCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAAATGGTTGAGAAGTCAGGCGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATCGCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GTCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCACAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCACTGGATCCGGTTTATGCCAAAAAATTGGG
CGTGAATATCGATGAGCTACTGGTTTCTCAGCCAGATACCGGCGAGCAAGCACTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCTGTGGATGTCATCGTTGTTGACTCAGTAGCGGCTTTGACACCAAAAGCGGAAATTGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCAATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACTACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCTGCGCCGTTTAAAGAAGCGAACACTCAGATCATGTATGGCCAAGGTTT
CAATCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAAATGGTTGAGAAGTCAGGCGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATCGCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.