Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | J9253_RS03800 | Genome accession | NZ_CP072801 |
| Coordinates | 799194..800240 (+) | Length | 348 a.a. |
| NCBI ID | WP_210223377.1 | Uniprot ID | - |
| Organism | Thiothrix litoralis strain AS | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 777851..800377 | 799194..800240 | within | 0 |
Gene organization within MGE regions
Location: 777851..800377
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9253_RS03680 (J9253_03680) | - | 778362..778736 (-) | 375 | WP_210223355.1 | YchJ family protein | - |
| J9253_RS03685 (J9253_03685) | - | 778744..779334 (-) | 591 | WP_210223356.1 | DUF1007 family protein | - |
| J9253_RS03690 (J9253_03690) | - | 779350..779874 (-) | 525 | WP_210223357.1 | hypothetical protein | - |
| J9253_RS03695 (J9253_03695) | - | 780084..780803 (+) | 720 | WP_210223358.1 | class I SAM-dependent methyltransferase | - |
| J9253_RS03700 (J9253_03700) | - | 780855..782342 (+) | 1488 | WP_210223359.1 | leucyl aminopeptidase | - |
| J9253_RS03705 (J9253_03705) | - | 782351..782779 (+) | 429 | WP_210223360.1 | DNA polymerase III subunit chi | - |
| J9253_RS03710 (J9253_03710) | - | 782792..783142 (+) | 351 | WP_228291499.1 | hypothetical protein | - |
| J9253_RS03715 (J9253_03715) | - | 783191..786016 (+) | 2826 | WP_210223361.1 | valine--tRNA ligase | - |
| J9253_RS03720 (J9253_03720) | - | 786222..786494 (-) | 273 | WP_210223362.1 | cold shock domain-containing protein | - |
| J9253_RS03725 (J9253_03725) | - | 786537..787541 (-) | 1005 | WP_210223363.1 | IS481 family transposase | - |
| J9253_RS03730 (J9253_03730) | - | 787711..787965 (+) | 255 | WP_210223364.1 | UPF0175 family protein | - |
| J9253_RS03735 (J9253_03735) | - | 787965..788441 (+) | 477 | WP_210223365.1 | DUF3368 domain-containing protein | - |
| J9253_RS03740 (J9253_03740) | - | 788438..788776 (-) | 339 | WP_210223366.1 | XisI protein | - |
| J9253_RS03745 (J9253_03745) | - | 788761..789108 (-) | 348 | WP_210223367.1 | element excision factor XisH family protein | - |
| J9253_RS03750 (J9253_03750) | - | 789349..789597 (+) | 249 | WP_210223368.1 | hypothetical protein | - |
| J9253_RS03755 (J9253_03755) | - | 789785..790369 (-) | 585 | WP_210223369.1 | Uma2 family endonuclease | - |
| J9253_RS03760 (J9253_03760) | queC | 790391..791083 (-) | 693 | WP_210223370.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| J9253_RS03765 (J9253_03765) | - | 791080..791961 (-) | 882 | WP_210223371.1 | AAA family ATPase | - |
| J9253_RS03770 (J9253_03770) | - | 791995..792648 (-) | 654 | WP_210223372.1 | YceH family protein | - |
| J9253_RS03775 (J9253_03775) | aat | 792672..793421 (-) | 750 | WP_210223373.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| J9253_RS03780 (J9253_03780) | trxB | 793431..794393 (-) | 963 | WP_210223374.1 | thioredoxin-disulfide reductase | - |
| J9253_RS03785 (J9253_03785) | - | 794510..797059 (+) | 2550 | WP_210223375.1 | DNA translocase FtsK | - |
| J9253_RS03790 (J9253_03790) | lolA | 797077..797712 (+) | 636 | WP_210223376.1 | outer membrane lipoprotein chaperone LolA | - |
| J9253_RS03795 (J9253_03795) | - | 797730..798986 (+) | 1257 | WP_210224529.1 | replication-associated recombination protein A | - |
| J9253_RS03800 (J9253_03800) | recA | 799194..800240 (+) | 1047 | WP_210223377.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37125.23 Da Isoelectric Point: 4.9667
>NTDB_id=555920 J9253_RS03800 WP_210223377.1 799194..800240(+) (recA) [Thiothrix litoralis strain AS]
MDENKKKALAAALGQIERQYGKGAVMRMGDSSASRDIESISTGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQVI
AECQKLGGTAAFVDAEHALDPIYAQKLGVNVDDLLVSQPDNGEQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTGNIKRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEITGS
ETRVKVVKNKVAPPFKQAEFEILYGEGISREGELVDLGAKQGLIGKAGAWYSYKGDKIGQGKDNARNYLKEHPAAAAEIE
KAIREAAFSTPDFAPSAVEESDVEDDEV
MDENKKKALAAALGQIERQYGKGAVMRMGDSSASRDIESISTGSLGLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQVI
AECQKLGGTAAFVDAEHALDPIYAQKLGVNVDDLLVSQPDNGEQALEITDMLVRSGAVDIVVVDSVAALTPKAEIEGDMG
DSHVGLQARLMSQALRKLTGNIKRSNTMVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKKGDEITGS
ETRVKVVKNKVAPPFKQAEFEILYGEGISREGELVDLGAKQGLIGKAGAWYSYKGDKIGQGKDNARNYLKEHPAAAAEIE
KAIREAAFSTPDFAPSAVEESDVEDDEV
Nucleotide
Download Length: 1047 bp
>NTDB_id=555920 J9253_RS03800 WP_210223377.1 799194..800240(+) (recA) [Thiothrix litoralis strain AS]
ATGGACGAGAACAAAAAGAAAGCCTTAGCCGCCGCCTTAGGTCAGATTGAGCGCCAATACGGTAAGGGCGCTGTGATGCG
CATGGGTGATTCCAGCGCCTCCCGTGATATTGAATCGATTTCCACCGGGTCATTGGGTCTGGATATTGCCCTAGGTATCG
GTGGTTTGCCCAAAGGCCGTGTGGTCGAAATTTACGGCCCGGAATCTTCCGGCAAAACCACGCTGACCCTGCAAGTGATT
GCCGAATGCCAAAAGCTCGGCGGTACAGCCGCATTCGTGGATGCGGAACACGCCCTTGACCCGATTTACGCGCAAAAACT
CGGCGTAAACGTGGATGACCTGCTGGTTTCTCAGCCGGATAATGGTGAGCAAGCGTTGGAAATTACCGATATGCTGGTGC
GTTCCGGCGCAGTTGACATTGTAGTGGTGGACTCGGTAGCGGCTTTGACCCCGAAAGCTGAAATCGAAGGCGATATGGGC
GACTCACACGTTGGCTTACAAGCGCGTCTGATGTCACAAGCCTTGAGAAAATTGACCGGGAACATCAAGCGTTCCAATAC
CATGGTGATTTTCATCAACCAGATTCGGATGAAAATCGGTGTTATGTTTGGCAACCCGGAAACCACCACCGGCGGTAATG
CGCTGAAATTCTACGCTTCGGTACGTCTCGACATTCGCCGCATTGGTGCGATCAAGAAGGGCGACGAAATCACCGGTTCT
GAAACCCGCGTGAAAGTGGTCAAGAACAAGGTGGCGCCACCGTTTAAGCAAGCTGAGTTTGAAATCCTCTACGGTGAAGG
CATTTCCCGCGAAGGCGAATTGGTTGATTTGGGTGCTAAACAAGGACTGATTGGCAAAGCAGGTGCATGGTACAGTTATA
AAGGTGATAAAATTGGCCAAGGTAAGGACAATGCGCGTAATTACCTGAAAGAACACCCGGCCGCTGCGGCTGAAATTGAA
AAAGCGATCCGCGAAGCCGCATTTAGTACGCCCGATTTTGCCCCCTCTGCTGTTGAAGAATCGGATGTAGAGGACGACGA
GGTATAA
ATGGACGAGAACAAAAAGAAAGCCTTAGCCGCCGCCTTAGGTCAGATTGAGCGCCAATACGGTAAGGGCGCTGTGATGCG
CATGGGTGATTCCAGCGCCTCCCGTGATATTGAATCGATTTCCACCGGGTCATTGGGTCTGGATATTGCCCTAGGTATCG
GTGGTTTGCCCAAAGGCCGTGTGGTCGAAATTTACGGCCCGGAATCTTCCGGCAAAACCACGCTGACCCTGCAAGTGATT
GCCGAATGCCAAAAGCTCGGCGGTACAGCCGCATTCGTGGATGCGGAACACGCCCTTGACCCGATTTACGCGCAAAAACT
CGGCGTAAACGTGGATGACCTGCTGGTTTCTCAGCCGGATAATGGTGAGCAAGCGTTGGAAATTACCGATATGCTGGTGC
GTTCCGGCGCAGTTGACATTGTAGTGGTGGACTCGGTAGCGGCTTTGACCCCGAAAGCTGAAATCGAAGGCGATATGGGC
GACTCACACGTTGGCTTACAAGCGCGTCTGATGTCACAAGCCTTGAGAAAATTGACCGGGAACATCAAGCGTTCCAATAC
CATGGTGATTTTCATCAACCAGATTCGGATGAAAATCGGTGTTATGTTTGGCAACCCGGAAACCACCACCGGCGGTAATG
CGCTGAAATTCTACGCTTCGGTACGTCTCGACATTCGCCGCATTGGTGCGATCAAGAAGGGCGACGAAATCACCGGTTCT
GAAACCCGCGTGAAAGTGGTCAAGAACAAGGTGGCGCCACCGTTTAAGCAAGCTGAGTTTGAAATCCTCTACGGTGAAGG
CATTTCCCGCGAAGGCGAATTGGTTGATTTGGGTGCTAAACAAGGACTGATTGGCAAAGCAGGTGCATGGTACAGTTATA
AAGGTGATAAAATTGGCCAAGGTAAGGACAATGCGCGTAATTACCTGAAAGAACACCCGGCCGCTGCGGCTGAAATTGAA
AAAGCGATCCGCGAAGCCGCATTTAGTACGCCCGATTTTGCCCCCTCTGCTGTTGAAGAATCGGATGTAGAGGACGACGA
GGTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.