Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MYCSM_RS12250 Genome accession   NC_019966
Coordinates   2507570..2508622 (+) Length   350 a.a.
NCBI ID   WP_015306471.1    Uniprot ID   L0IY59
Organism   Mycobacterium sp. JS623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2502570..2513622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYCSM_RS12230 (Mycsm_02552) - 2503186..2504982 (-) 1797 WP_015306467.1 nickel-dependent hydrogenase large subunit -
  MYCSM_RS12235 (Mycsm_02553) - 2505073..2506128 (-) 1056 WP_015306468.1 Ni,Fe-hydrogenase I small subunit -
  MYCSM_RS12240 (Mycsm_02554) hypB 2506236..2507012 (-) 777 WP_015306469.1 hydrogenase nickel incorporation protein HypB -
  MYCSM_RS12245 (Mycsm_02555) - 2507015..2507344 (-) 330 WP_041313881.1 hydrogenase maturation nickel metallochaperone HypA -
  MYCSM_RS12250 (Mycsm_02556) recA 2507570..2508622 (+) 1053 WP_015306471.1 recombinase RecA Machinery gene
  MYCSM_RS12255 (Mycsm_02557) recX 2508588..2509118 (+) 531 WP_015306472.1 recombination regulator RecX -
  MYCSM_RS12260 (Mycsm_02558) - 2509127..2510011 (-) 885 WP_015306473.1 amino acid ABC transporter permease -
  MYCSM_RS12265 (Mycsm_02559) - 2510012..2510692 (-) 681 WP_015306474.1 amino acid ABC transporter permease -
  MYCSM_RS12270 (Mycsm_02560) - 2510708..2511523 (-) 816 WP_015306475.1 glutamate ABC transporter substrate-binding protein -
  MYCSM_RS12275 (Mycsm_02561) - 2511548..2512276 (-) 729 WP_051073896.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37326.64 Da        Isoelectric Point: 4.8644

>NTDB_id=55522 MYCSM_RS12250 WP_015306471.1 2507570..2508622(+) (recA) [Mycobacterium sp. JS623]
MVQAPDREKALELALAQIDKNFGKGSVMRLGEEVRQPISVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHA
VANAQAAGGIAAFIDAEHALDPDYAQKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDILVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGTDAVG
NRTRVKVVKNKVSPPFKQAEFDILYGKGISKEGSLIDMGVEQGFIRKSGSWFTYEGEQLGQGKENARNFLLENVDVANEI
EKKIKEKLGIGAVVTAEVANDEVLPAPVDF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=55522 MYCSM_RS12250 WP_015306471.1 2507570..2508622(+) (recA) [Mycobacterium sp. JS623]
ATGGTTCAGGCACCCGACCGCGAGAAGGCCCTCGAGTTGGCCCTCGCGCAGATCGACAAGAACTTCGGCAAAGGCTCGGT
GATGCGGCTCGGTGAAGAGGTGCGCCAGCCGATCTCCGTCATCCCCACCGGCTCGATCGCGCTGGACGTGGCGCTCGGCA
TCGGCGGGCTTCCTCGCGGCCGAGTGGTCGAGATCTACGGCCCGGAGTCCTCAGGTAAGACCACCGTCGCGCTGCATGCG
GTCGCCAACGCCCAGGCCGCAGGCGGCATCGCGGCGTTCATCGACGCCGAGCATGCGCTGGATCCGGACTACGCCCAGAA
ACTCGGGGTGGACACCGATTCGCTGCTGGTATCCCAGCCCGACACCGGTGAGCAGGCGCTGGAGATCGCCGACATGCTGA
TCCGCTCCGGCGCGCTGGACATTCTGGTCATCGACTCGGTGGCCGCGCTGGTGCCACGCGCCGAGATCGAAGGCGAGATG
GGGGACAGCCACGTCGGCCTGCAGGCCCGGCTGATGAGCCAGGCGCTGCGGAAGATGACTGGCGCGCTGAACAATTCGGG
CACCACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCCGAAACGACAACGGGTGGAA
AGGCATTGAAGTTCTACGCCTCGGTTCGCTTGGACGTCAGGCGAATTGAGACGCTGAAGGACGGCACCGACGCGGTCGGC
AACCGCACCCGCGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCAAGCAGGCCGAGTTCGACATTCTTTACGGCAA
GGGCATCAGCAAGGAAGGCTCGCTCATCGACATGGGCGTCGAGCAGGGCTTCATCCGTAAGTCCGGGTCCTGGTTCACCT
ATGAGGGTGAGCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTGCTGGAAAACGTCGACGTGGCCAACGAGATC
GAGAAGAAGATCAAGGAAAAGCTCGGCATCGGTGCCGTGGTGACCGCGGAGGTGGCCAATGACGAAGTCCTGCCCGCCCC
CGTCGACTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0IY59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

69.231

92.857

0.643
  recA Pseudomonas stutzeri DSM 10701

64.638

98.571

0.637
  recA Latilactobacillus sakei subsp. sakei 23K

66.463

93.714

0.623
  recA Ralstonia pseudosolanacearum GMI1000

66.563

92.286

0.614
  recA Streptococcus mitis SK321

61.808

98

0.606
  recA Lactococcus lactis subsp. cremoris KW2

64.134

94

0.603
  recA Neisseria gonorrhoeae MS11

63.363

95.143

0.603
  recA Neisseria gonorrhoeae MS11

63.363

95.143

0.603
  recA Neisseria gonorrhoeae strain FA1090

63.363

95.143

0.603
  recA Acinetobacter baumannii D1279779

65.015

92.286

0.6
  recA Acinetobacter baylyi ADP1

65.015

92.286

0.6
  recA Helicobacter pylori 26695

60.933

98

0.597
  recA Helicobacter pylori strain NCTC11637

60.933

98

0.597
  recA Streptococcus pneumoniae Rx1

62.614

94

0.589
  recA Streptococcus pneumoniae D39

62.614

94

0.589
  recA Streptococcus pneumoniae R6

62.614

94

0.589
  recA Streptococcus pneumoniae TIGR4

62.614

94

0.589
  recA Glaesserella parasuis strain SC1401

59.71

98.571

0.589
  recA Streptococcus mitis NCTC 12261

62.31

94

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

94

0.583
  recA Streptococcus pyogenes NZ131

62.195

93.714

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.631

94.571

0.583
  recA Streptococcus mutans UA159

61.702

94

0.58
  recA Vibrio cholerae strain A1552

62.848

92.286

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.848

92.286

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.87

92

0.56

Multiple sequence alignment