Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J8I93_RS16170 Genome accession   NZ_CP072689
Coordinates   3414021..3415082 (-) Length   353 a.a.
NCBI ID   WP_001516934.1    Uniprot ID   A0A7U9DIL1
Organism   Escherichia marmotae strain YF8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3409021..3420082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8I93_RS16155 (J8I93_15980) csrA 3410273..3410458 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  J8I93_RS16160 (J8I93_15985) alaS 3410693..3413323 (-) 2631 WP_061090676.1 alanine--tRNA ligase -
  J8I93_RS16165 (J8I93_15990) recX 3413453..3413953 (-) 501 WP_282502868.1 recombination regulator RecX -
  J8I93_RS16170 (J8I93_15995) recA 3414021..3415082 (-) 1062 WP_001516934.1 recombinase RecA Machinery gene
  J8I93_RS16175 (J8I93_16000) pncC 3415162..3415659 (-) 498 WP_000132228.1 nicotinamide-nucleotide amidase -
  J8I93_RS16180 (J8I93_16005) - 3415841..3416080 (+) 240 WP_000201680.1 hypothetical protein -
  J8I93_RS16185 (J8I93_16010) mltB 3416120..3417205 (-) 1086 WP_010380861.1 lytic murein transglycosylase B -
  J8I93_RS16190 (J8I93_16015) srlA 3417461..3418024 (+) 564 WP_000573320.1 PTS glucitol/sorbitol transporter subunit IIC -
  J8I93_RS16195 (J8I93_16020) srlE 3418021..3418980 (+) 960 WP_000196931.1 PTS glucitol/sorbitol transporter subunit IIB -
  J8I93_RS16200 (J8I93_16025) srlB 3418991..3419362 (+) 372 WP_061090678.1 PTS glucitol/sorbitol transporter subunit IIA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37943.35 Da        Isoelectric Point: 4.8171

>NTDB_id=555163 J8I93_RS16170 WP_001516934.1 3414021..3415082(-) (recA) [Escherichia marmotae strain YF8]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNATPDFSVDDSEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=555163 J8I93_RS16170 WP_001516934.1 3414021..3415082(-) (recA) [Escherichia marmotae strain YF8]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGGCCGGAATCTTCCGGTAAAACCACGCTGACGCTACAGGTG
ATTGCCGCTGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAGTCTATGCACGTAA
ACTGGGCGTCGATATTGATAATCTGCTGTGCTCTCAACCGGACACTGGTGAGCAGGCTCTGGAAATCTGTGACGCTCTGG
CACGTTCTGGCGCGGTAGATGTTATCGTTGTTGACTCCGTTGCGGCGCTGACGCCGAAAGCAGAAATCGAAGGCGAAATT
GGTGACTCTCATATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAATCCAA
CACGTTGCTGATTTTCATCAACCAGATCCGTATGAAAATTGGCGTGATGTTCGGTAACCCTGAAACCACTACCGGTGGTA
ATGCGCTGAAATTCTACGCTTCTGTTCGTCTCGATATCCGCCGTATTGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACTCGCGTGAAAGTTGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAAATCCTCTACGGCGA
AGGCATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGTGCATGGTACAGCT
ATAAAGGCGAGAAGATCGGCCAGGGTAAAGCAAATGCGACAGCATGGCTGAAAGACAACCCGGAAACTGCGAAAGAGATC
GAGAAGAAAGTGCGTGAGTTGCTGCTGAGCAACCCAAATGCAACGCCAGATTTCTCTGTTGATGACAGCGAAGGTGTAGC
AGAAACGAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U9DIL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.768

0.793
  recA Vibrio cholerae strain A1552

84.592

93.768

0.793
  recA Pseudomonas stutzeri DSM 10701

74.481

95.467

0.711
  recA Acinetobacter baumannii D1279779

74.085

92.918

0.688
  recA Acinetobacter baylyi ADP1

73.78

92.918

0.686
  recA Glaesserella parasuis strain SC1401

69.452

98.3

0.683
  recA Neisseria gonorrhoeae MS11

69.325

92.351

0.64
  recA Neisseria gonorrhoeae MS11

69.325

92.351

0.64
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.351

0.64
  recA Ralstonia pseudosolanacearum GMI1000

70.159

89.235

0.626
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Helicobacter pylori strain NCTC11637

61.721

95.467

0.589
  recA Helicobacter pylori 26695

61.424

95.467

0.586
  recA Streptococcus pneumoniae TIGR4

63.467

91.501

0.581
  recA Streptococcus pneumoniae Rx1

63.467

91.501

0.581
  recA Streptococcus pneumoniae D39

63.467

91.501

0.581
  recA Streptococcus pneumoniae R6

63.467

91.501

0.581
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

91.785

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.661

94.334

0.572
  recA Streptococcus mutans UA159

62.154

92.068

0.572
  recA Streptococcus pyogenes NZ131

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.935

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.935

0.558