Detailed information NTG0554793

Bioinformatically predicted

Overview

• Name: uvrB
• Type: Machinery gene
• Locus tag: LZ752_RS09325
• Genome accession: NZ_CP090518
• Coordinates: 2045832..2047841 (-)
• Length: 669 a.a.
• NCBI ID: WP_004089700.1
• Uniprot ID: Q87AT6
• Organism: Xylella fastidiosa subsp. fastidiosa strain Stag's Leap
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2040832..2052841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ752_RS09290 (LZ752_09290)	-	2042086..2042364 (+)	279	WP_011097962.1	VRR-NUC domain-containing protein	-
LZ752_RS09295 (LZ752_09295)	-	2042366..2042650 (-)	285	WP_011098229.1	DUF1640 domain-containing protein	-
LZ752_RS09300 (LZ752_09300)	-	2042735..2044153 (+)	1419	WP_061278157.1	DEAD/DEAH box helicase	-
LZ752_RS09305 (LZ752_09305)	-	2044150..2044389 (+)	240	WP_061278160.1	hypothetical protein	-
LZ752_RS09310 (LZ752_09310)	-	2044376..2044699 (+)	324	WP_004089706.1	helix-turn-helix domain-containing protein	-
LZ752_RS09315 (LZ752_09315)	-	2045026..2045646 (+)	621	WP_014607459.1	tyrosine-type recombinase/integrase	-
LZ752_RS09325 (LZ752_09325)	uvrB	2045832..2047841 (-)	2010	WP_004089700.1	excinuclease ABC subunit UvrB	Machinery gene
LZ752_RS09330 (LZ752_09330)	-	2047996..2048583 (+)	588	WP_011098232.1	Tfp pilus assembly protein FimT/FimU	-
LZ752_RS09335 (LZ752_09335)	-	2049041..2049547 (-)	507	WP_004089696.1	hypothetical protein	-
LZ752_RS09340 (LZ752_09340)	dapA	2049567..2050475 (-)	909	WP_004089694.1	4-hydroxy-tetrahydrodipicolinate synthase	-
LZ752_RS09345 (LZ752_09345)	-	2050628..2051203 (+)	576	WP_011098233.1	glycine cleavage system protein R	-
LZ752_RS09350 (LZ752_09350)	-	2051250..2051729 (+)	480	WP_004089690.1	peroxiredoxin	-

Sequence

Protein

• Length: 669 a.a.
• Molecular weight: 75438.07 Da
• Isoelectric Point: 5.2614

>NTDB_id=554793 LZ752_RS09325 WP_004089700.1 2045832..2047841(-) (uvrB) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
MTGLFQLVSSYSPSGDQPAAVQKLVTNFHAGIAKQVLLGVTGSGKTYTIANVVEQIQKPTLVMAPNKTLAAQLYGEFKAF
FPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDSSINEYIEQMRLAATKALLSRSDVLVVATVSAIYGLGAPEDYLSLRLI
LSLGEHIEQRQLIRHLTELQYTRNELDLVRGSFRVRGEVVDVFPAESEMEALRIELFDGEIESLSLFDPLTGQTVRKLQR
FSVYPKTHYATTRERTLSAVDTIKDELKEYLELLYGRNKLVEAQRLAQRTQFDLEMMAEVGYCNGIENYSRHLTGKAPGE
PPPTLFDYLPPDALLVIDESHVTIPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLRFEEWEVRSPRSIYVSATPGSYE
FRESAGEVIELLVRPTGLIDPEIEIRPVATQVDDLISQINACIKLGDRVLVTTLTKRMAENLTEYLSEQGIRIRYLHSEI
DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTSSLIQTIGRAARSVRGRAILYADKVTRS
MRAAIDETERRRQKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVPADYGALNQAEIAAQMKVLEQK
MYQHARDLEFEDAARIRDQIQRLREAGLG

Nucleotide

• Length: 2010 bp

>NTDB_id=554793 LZ752_RS09325 WP_004089700.1 2045832..2047841(-) (uvrB) [Xylella fastidiosa subsp. fastidiosa strain Stag's Leap]
ATGACAGGTTTGTTTCAGCTTGTTTCTTCATACTCTCCTTCTGGGGATCAGCCTGCGGCTGTACAGAAGCTAGTCACTAA
TTTCCATGCTGGCATTGCTAAGCAGGTGTTGCTTGGCGTTACTGGTTCTGGGAAGACTTACACCATCGCTAATGTGGTTG
AGCAGATTCAGAAGCCAACTCTGGTGATGGCGCCAAACAAGACGTTGGCAGCACAGCTTTACGGGGAATTCAAGGCGTTC
TTCCCGCACAATGCGGTGGAATATTTTGTCAGCTACTATGACTACTATCAGCCTGAGGCGTATGTTCCAGCCTCGGACAC
GTTCATTGAAAAGGACAGTTCTATCAATGAATACATTGAACAGATGCGTTTGGCTGCAACGAAGGCTTTGCTGTCACGTT
CTGATGTGTTGGTGGTGGCGACCGTGTCGGCGATTTATGGTTTGGGTGCGCCTGAGGATTATCTTTCGTTACGTTTGATT
TTGTCGCTGGGTGAGCATATTGAGCAGCGGCAATTGATCAGGCATCTCACTGAGTTGCAGTACACTCGTAACGAGTTGGA
TTTGGTGCGTGGTAGTTTCCGTGTACGTGGTGAGGTTGTTGATGTATTCCCGGCTGAGTCAGAGATGGAGGCGCTGCGCA
TTGAGTTGTTTGATGGTGAGATAGAAAGTTTGAGCTTGTTCGATCCGCTTACCGGTCAGACGGTACGTAAGTTGCAACGT
TTTAGTGTTTACCCTAAAACCCACTATGCAACTACGCGTGAACGTACGCTCAGTGCCGTTGATACGATCAAGGATGAGCT
GAAAGAGTATCTAGAACTTCTGTATGGGCGGAATAAGTTGGTTGAGGCGCAACGTTTAGCTCAGCGTACTCAGTTCGACT
TAGAGATGATGGCCGAGGTTGGTTATTGCAATGGTATTGAAAATTACTCTCGTCACTTAACTGGTAAGGCTCCGGGGGAA
CCTCCACCGACGTTGTTCGATTATCTTCCTCCGGATGCGCTACTGGTCATTGATGAGTCGCATGTGACAATTCCGCAGAT
CGGTGCGATGTTCAAGGGGGACCGTTCCCGTAAAGAAACGCTGGTGGAATTTGGTTTCCGTTTACCATCGGCGTTAGACA
ATCGACCGCTTCGCTTTGAGGAATGGGAAGTGCGTTCGCCGCGTAGCATTTACGTCTCGGCGACTCCAGGATCATATGAG
TTCCGCGAGTCCGCGGGTGAAGTCATAGAGTTGCTGGTGCGTCCGACCGGCTTGATTGATCCTGAGATAGAAATCCGTCC
GGTTGCGACGCAGGTGGATGATCTGATTTCCCAGATCAATGCGTGTATCAAGTTAGGTGATCGGGTTTTGGTCACCACGT
TAACTAAGCGTATGGCTGAGAACCTCACTGAATATTTGAGCGAGCAGGGTATCCGGATACGTTATTTGCATTCGGAAATC
GATACGGTAGAACGTGTGGAGATCATCCGTGATTTGCGTCTTGGTAAATTCGATGTGCTGGTTGGTATCAACCTTCTACG
TGAGGGATTGGATATGCCGGAGGTGTCGTTGGTGGCCATTCTTGACGCTGATAAAGAGGGGTTTTTGCGTTCGACCAGTT
CACTGATTCAGACGATTGGTCGTGCCGCACGCAGTGTGCGCGGTAGGGCAATCTTGTATGCCGATAAAGTGACTCGTTCA
ATGCGCGCTGCAATTGATGAAACCGAGCGACGTCGACAAAAGCAGAAGGAATACAATGCTGAGAACGGTATTGTTCCGAA
ATCCGTTGTACGGCCCATTAGCGACATTTTGGAGGGTGCGCGAGATGGTGTCGAGGTGAAGAGCAAGGGGAAGGGGCGCA
GAGTTGATGAGGTTCCCGCTGACTATGGTGCGCTTAATCAAGCTGAGATTGCCGCACAGATGAAAGTGCTGGAGCAAAAG
ATGTACCAGCATGCGCGTGATTTGGAGTTTGAGGATGCGGCGCGTATTCGCGATCAAATTCAGCGGCTTAGGGAGGCTGG
TCTGGGTTAA

Domains

Predicted by InterProScan.

• Ultra-violet resistance protein B (UvrB) (552-593)

• Type III restriction enzyme, res subunit (ResIII) (16-92)

• UvrB/uvrC motif (UVR) (635-665)

• UvrB interaction domain (UvrB_inter) (160-249)

• Helicase conserved C-terminal domain (Helicase_C) (441-544)

3D structure

• AlphaFold DB: Q87AT6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrB	Streptococcus pneumoniae TIGR4	55.03	98.057	0.54
uvrB	Streptococcus pneumoniae R6	54.878	98.057	0.538
uvrB	Streptococcus pneumoniae D39	54.878	98.057	0.538