Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J8C06_RS00195 Genome accession   NZ_CP072648
Coordinates   50894..51946 (-) Length   350 a.a.
NCBI ID   WP_211428800.1    Uniprot ID   -
Organism   Chloracidobacterium validum strain BV2-C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45894..56946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8C06_RS00180 (J8C06_00180) - 46937..47506 (-) 570 WP_211428797.1 hypothetical protein -
  J8C06_RS00185 (J8C06_00185) - 47788..49230 (+) 1443 WP_211428798.1 sigma-54 dependent transcriptional regulator -
  J8C06_RS00190 (J8C06_00190) - 49427..50812 (+) 1386 WP_211428799.1 FAD-dependent oxidoreductase -
  J8C06_RS00195 (J8C06_00195) recA 50894..51946 (-) 1053 WP_211428800.1 recombinase RecA Machinery gene
  J8C06_RS00200 (J8C06_00200) - 52172..53320 (+) 1149 WP_211428801.1 HEAT repeat domain-containing protein -
  J8C06_RS00205 (J8C06_00205) - 53332..54297 (-) 966 WP_211428802.1 hypothetical protein -
  J8C06_RS00210 (J8C06_00210) - 54355..55386 (+) 1032 WP_246602043.1 alcohol dehydrogenase catalytic domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37514.03 Da        Isoelectric Point: 6.8699

>NTDB_id=554793 J8C06_RS00195 WP_211428800.1 50894..51946(-) (recA) [Chloracidobacterium validum strain BV2-C]
MTDERQERNKAIDAAIAGLEKQFGKGVIMRLGERQALEVPAISTTCLSLDAAIGIGGMPRGRIVEIYGPESGGKTTLALH
VVAEAQRTGGQVAFIDAEHALDPSYAAKLGVDIENLFVSQPDSGEQALEIAEALVRSTAFDLVVVDSVAALVPKAELDGD
MGDSLPGLQARLMSQALRKLTAVANRTNTCLIFINQIREKIGVMWGSPETTTGGRALKFYASVRIDIRRTASIKDGEEVI
GSRTKAKIAKNKLAPPFKEVEFDIIYGKGISRIGDLLDLGVEHKLIEKSGAWFSIKGGERLGQGRENAKQALATNQALCE
RLEQELRAILMPHRVTPSADTGAKAKGASE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=554793 J8C06_RS00195 WP_211428800.1 50894..51946(-) (recA) [Chloracidobacterium validum strain BV2-C]
ATGACTGACGAACGACAGGAACGCAACAAAGCCATTGATGCCGCTATTGCCGGACTCGAAAAACAATTTGGCAAGGGCGT
CATCATGCGCCTTGGGGAGCGCCAGGCCCTTGAAGTCCCGGCAATTTCAACAACCTGCCTCAGCCTTGACGCGGCCATTG
GCATTGGCGGCATGCCGCGGGGTCGCATCGTCGAGATTTACGGGCCGGAGTCGGGCGGCAAAACGACGCTCGCGCTGCAC
GTCGTTGCCGAAGCGCAGCGCACCGGCGGACAGGTGGCCTTCATTGACGCCGAACATGCGCTTGACCCCAGCTATGCCGC
CAAGCTGGGCGTGGATATTGAAAACCTTTTCGTCTCCCAGCCGGATAGCGGCGAGCAGGCGCTTGAAATTGCCGAAGCCT
TGGTTCGTTCGACGGCTTTCGATTTGGTGGTGGTGGACTCGGTTGCTGCCCTCGTCCCCAAGGCAGAGCTTGACGGCGAT
ATGGGCGACTCCCTCCCCGGACTCCAGGCCCGCCTGATGTCGCAGGCCCTGCGCAAGTTGACGGCGGTGGCCAACCGCAC
CAACACCTGCCTGATTTTCATCAATCAAATCCGCGAAAAAATTGGCGTCATGTGGGGATCGCCCGAAACGACGACTGGCG
GGCGGGCGCTCAAATTTTACGCCTCCGTCCGCATCGACATCCGCCGCACGGCTTCCATCAAGGATGGCGAAGAGGTCATC
GGCAGTCGAACCAAAGCCAAGATTGCGAAAAACAAACTCGCTCCCCCCTTCAAGGAAGTTGAGTTTGACATCATTTATGG
GAAGGGGATTTCCCGGATTGGCGACCTGCTCGACCTTGGCGTGGAGCACAAGCTCATCGAGAAGAGCGGCGCCTGGTTCT
CAATCAAAGGGGGCGAGCGCCTGGGACAAGGCCGCGAAAACGCCAAGCAAGCCCTGGCGACGAACCAGGCCCTCTGCGAG
CGGCTCGAGCAGGAACTGCGCGCGATTTTGATGCCACACCGTGTCACGCCGTCAGCGGACACCGGCGCCAAGGCCAAGGG
CGCGTCGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

65.204

91.143

0.594
  recA Pseudomonas stutzeri DSM 10701

59.942

99.143

0.594
  recA Vibrio cholerae strain A1552

60.117

97.429

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.117

97.429

0.586
  recA Glaesserella parasuis strain SC1401

62.08

93.429

0.58
  recA Helicobacter pylori 26695

62.539

92.286

0.577
  recA Helicobacter pylori strain NCTC11637

62.539

92.286

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.714

0.574
  recA Acinetobacter baylyi ADP1

59.821

96

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.79

94

0.571
  recA Neisseria gonorrhoeae strain FA1090

61.42

92.571

0.569
  recA Neisseria gonorrhoeae MS11

61.42

92.571

0.569
  recA Neisseria gonorrhoeae MS11

61.42

92.571

0.569
  recA Streptococcus mutans UA159

60.923

92.857

0.566
  recA Acinetobacter baumannii D1279779

60.736

93.143

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.104

95.714

0.566
  recA Streptococcus pyogenes NZ131

60.615

92.857

0.563
  recA Streptococcus mitis NCTC 12261

60.308

92.857

0.56
  recA Streptococcus mitis SK321

60.308

92.857

0.56
  recA Streptococcus pneumoniae D39

60.123

93.143

0.56
  recA Streptococcus pneumoniae Rx1

60.123

93.143

0.56
  recA Streptococcus pneumoniae R6

60.123

93.143

0.56
  recA Streptococcus pneumoniae TIGR4

60.123

93.143

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

59.877

92.571

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.589

93.143

0.546
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.19

91.714

0.543