Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J5226_RS14000 Genome accession   NZ_CP072597
Coordinates   3227641..3228669 (+) Length   342 a.a.
NCBI ID   WP_215835096.1    Uniprot ID   -
Organism   Lysobacter sp. K5869     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3222641..3233669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5226_RS13975 (J5226_13975) - 3223262..3224260 (+) 999 WP_215835091.1 hypothetical protein -
  J5226_RS13980 (J5226_13980) - 3224880..3225404 (+) 525 WP_215835092.1 CinA family protein -
  J5226_RS13985 (J5226_13985) - 3225645..3226586 (-) 942 WP_215835093.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  J5226_RS13990 (J5226_13990) lexA 3226706..3227368 (+) 663 WP_215835094.1 transcriptional repressor LexA -
  J5226_RS13995 (J5226_13995) - 3227365..3227604 (+) 240 WP_215835095.1 hypothetical protein -
  J5226_RS14000 (J5226_14000) recA 3227641..3228669 (+) 1029 WP_215835096.1 recombinase RecA Machinery gene
  J5226_RS25435 recX 3229238..3229738 (+) 501 WP_255323114.1 recombination regulator RecX -
  J5226_RS14010 (J5226_14010) alaS 3229904..3232537 (+) 2634 WP_215835097.1 alanine--tRNA ligase -
  J5226_RS14015 (J5226_14015) csrA 3232682..3232885 (+) 204 WP_057948118.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36899.45 Da        Isoelectric Point: 5.0741

>NTDB_id=554469 J5226_RS14000 WP_215835096.1 3227641..3228669(+) (recA) [Lysobacter sp. K5869]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRPVEAAEVVGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAAKLGVNIDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNVLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKMAPPFKQIVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCDGERIGQGKENARQYLKENPEMAQRL
EANLREKFVPAEASREESSDED

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=554469 J5226_RS14000 WP_215835096.1 3227641..3228669(+) (recA) [Lysobacter sp. K5869]
ATGGACGAGAACAAGAAGCGCGCGCTTGCGGCCGCCCTGGGCCAGATCGAAAAGCAATTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCCCGGTCGAAGCCGCCGAGGTCGTCGGCACCGGCTCGCTGATGCTCGACATCGCTCTGGGCATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAAATCTACGGCCCGGAATCCTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
CAGTGCCAGAAGAACGGCGGCACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTACGCCGCCAAGCTCGG
CGTCAACATCGACGACCTGCTGGTCTCCCAGCCCGACACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CGGCCGCGGTGGACATGGTCGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACGTGCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ATGCGCTCAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGATGGCCCCGCCGTTCAAGCAGATCGTCACCGAAATCCTCTACGGCGA
AGGCATCTCGCGCGAGGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCGGGCGCCTGGTACAGCT
GCGACGGCGAACGCATCGGCCAGGGCAAGGAAAACGCCCGCCAGTACCTCAAGGAAAACCCCGAAATGGCCCAGCGGCTG
GAAGCGAATCTGCGCGAGAAGTTCGTGCCGGCCGAGGCTTCGCGCGAAGAGAGCAGCGACGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

73.653

97.661

0.719
  recA Acinetobacter baylyi ADP1

71.848

99.708

0.716
  recA Acinetobacter baumannii D1279779

73.556

96.199

0.708
  recA Vibrio cholerae strain A1552

72.59

97.076

0.705
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.59

97.076

0.705
  recA Ralstonia pseudosolanacearum GMI1000

75.719

91.52

0.693
  recA Glaesserella parasuis strain SC1401

66.86

100

0.673
  recA Neisseria gonorrhoeae MS11

69.325

95.322

0.661
  recA Neisseria gonorrhoeae MS11

69.325

95.322

0.661
  recA Neisseria gonorrhoeae strain FA1090

69.325

95.322

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.938

93.567

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

97.368

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

63.692

95.029

0.605
  recA Streptococcus mutans UA159

58.405

100

0.599
  recA Helicobacter pylori strain NCTC11637

62.883

95.322

0.599
  recA Helicobacter pylori 26695

62.577

95.322

0.596
  recA Streptococcus mitis NCTC 12261

59.184

100

0.594
  recA Streptococcus mitis SK321

59.184

100

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

60.479

97.661

0.591
  recA Streptococcus pneumoniae R6

61.585

95.906

0.591
  recA Streptococcus pneumoniae TIGR4

61.585

95.906

0.591
  recA Streptococcus pneumoniae Rx1

61.585

95.906

0.591
  recA Streptococcus pneumoniae D39

61.585

95.906

0.591
  recA Streptococcus pyogenes NZ131

60.303

96.491

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60.308

95.029

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.875

93.275

0.558